API for stephenslab/susieR
Fit Sum of Single Effects Linear Regression Model

Global functions
Eloglik Source code
Eloglik_rss Source code
Eloglik_ss Source code
SER_posterior_e_loglik Source code
SER_posterior_e_loglik_rss Man page Source code
SER_posterior_e_loglik_ss Source code
add_null_effect Source code
calc_stderr Source code
calc_z Source code
check_projection Man page Source code
check_semi_pd Man page Source code
coef.susie Man page Source code
compute_MXt Man page Source code
compute_Xb Man page Source code
compute_Xty Man page Source code
compute_colSds Man page Source code
compute_ss Man page Source code
compute_tf_Xb Man page Source code
compute_tf_Xty Man page Source code
compute_tf_cm Man page Source code
compute_tf_csd Man page Source code
compute_tf_d Man page Source code
compute_tf_std_d Man page Source code
est_V_uniroot Man page Source code
estimate_mad_residual_variance Man page Source code
estimate_residual_variance Man page Source code
estimate_residual_variance_ss Man page Source code
get_ER2 Source code
get_ER2_rss Source code
get_ER2_ss Source code
get_R Source code
get_objective Man page Source code
get_objective_rss Man page Source code
get_objective_ss Man page Source code
get_purity Source code
in_CS Source code
in_CS_x Source code
init_finalize Source code
init_finalize_rss Source code
init_setup Source code
init_setup_rss Source code
is_symmetric_matrix Man page Source code
lbf Source code
lbf.grad Source code
loglik Man page Source code
loglik.grad Source code
loglik_rss Source code
muffled_corr Man page Source code
muffled_cov2cor Man page Source code
n_in_CS Source code
n_in_CS_x Source code
neg.loglik.logscale Source code
neg.loglik_z.logscale_rss Source code
negloglik.grad.logscale Source code
optimize_prior_variance Source code
optimize_prior_variance_rss Source code
predict.susie Man page Source code
remove_null_effects Source code
set_R_attributes Man page Source code
set_X_attributes Man page Source code
single_effect_regression Man page Source code
single_effect_regression_rss Man page Source code
single_effect_regression_ss Man page Source code
summary.susie Man page
susie Man page Source code
susie_auto Man page Source code
susie_bhat Man page Source code
susie_get_cs Man page Source code
susie_get_lfsr Man page Source code
susie_get_objective Man page Source code
susie_get_pip Man page Source code
susie_get_posterior_mean Man page Source code
susie_get_posterior_sd Man page Source code
susie_get_prior_variance Man page Source code
susie_get_residual_variance Man page Source code
susie_init_coef Man page Source code
susie_plot Man page Source code
susie_plot_changepoint Man page Source code
susie_plot_iteration Man page Source code
susie_rss Man page Source code
susie_slim Man page Source code
susie_ss Man page Source code
susie_trendfilter Man page Source code
univariate_regression Source code
update_Sigma Source code
update_each_effect Man page
update_each_effect_rss Man page
update_each_effect_ss Man page
stephenslab/susieR documentation built on Nov. 6, 2019, 1:09 p.m.