Files in stephenslab/susieR
Sum of Single Effects Linear Regression

.Rbuildignore
.Renviron
.circleci/config.yml
.gitignore
.travis.yml
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NOTES.txt
R/compute_ss.R R/data.R R/elbo.R R/elbo_rss.R R/elbo_ss.R R/estimate_residual_variance.R R/initialize.R R/initialize_rss.R R/predict.susie.R R/remove_null_effects.R R/set_R_attributes.R R/single_effect_regression.R R/single_effect_regression_rss.R R/single_effect_regression_ss.R R/sparse_multiplication.R R/summary.susie.R R/susie.R R/susieR-package.R R/susie_plot_changepoint.R R/susie_plots.R R/susie_rss.R R/susie_rss_lambda.R R/susie_ss.R R/susie_trendfilter.R R/susie_utils.R R/susie_zzz_auto.R R/trend_filtering_multiplication.R R/univariate_regression.R R/update_each_effect.R R/update_each_effect_rss.R R/update_each_effect_ss.R R/zzz.R README.md
_pkgdown.yml
appveyor.yml
data/FinemappingConvergence.RData
data/N2finemapping.RData
data/N3finemapping.RData
data/SummaryConsistency.RData
docs/404.html
docs/LICENSE-text.html
docs/LICENSE.html
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inst/CITATION
inst/analysis/optimize.Rmd inst/analysis/test_susie_auto.Rmd inst/analysis/testing.Rmd inst/code/caviar.R inst/code/compute_ss_memory.R
inst/code/dap-g.py
inst/code/finemap.R inst/code/finemap_1p4.R inst/code/gen_original_results.R
inst/code/monitor_memory.py
inst/code/python_example/N3finemapping_python.ipynb
inst/code/python_example/environment.yml
inst/code/sparse_matrix_strategy.Rmd inst/code/susie_memory.R inst/code/susie_rss_memory.R
inst/datafiles/FinemappingConvergence1k.RData
inst/datafiles/N3finemapping.CAVIAR.RData
inst/datafiles/N3finemapping.DAP.RData
inst/datafiles/N3finemapping.FINEMAP.RData
inst/datafiles/SummaryConsistency1k.RData
inst/misc/post-commit.sh
inst/misc/pre-commit.sh
man/FinemappingConvergence.Rd man/N2finemapping.Rd man/N3finemapping.Rd man/SummaryConsistency.Rd man/coef.susie.Rd man/compute_ss.Rd man/compute_suff_stat.Rd man/estimate_s_rss.Rd man/get_cs_correlation.Rd man/kriging_rss.Rd man/predict.susie.Rd man/single_effect_regression.Rd man/summary.susie.Rd man/susie.Rd man/susieR-package.Rd man/susie_auto.Rd man/susie_get_methods.Rd man/susie_init_coef.Rd man/susie_plot_changepoint.Rd man/susie_plots.Rd man/susie_rss.Rd man/susie_trendfilter.Rd man/univariate_regression.Rd
susieR.Rproj
tests/README.md tests/testthat.R
tests/testthat/ER2_original_res.rds
tests/testthat/ER2_rss_lambda0_res.rds
tests/testthat/ER2_rss_lambda1_res.rds
tests/testthat/Eloglik_original_res.rds
tests/testthat/Eloglik_rss_lambda0_res.rds
tests/testthat/Eloglik_rss_lambda1_res.rds
tests/testthat/SER_original_res.rds
tests/testthat/SER_rss_lambda0_res.rds
tests/testthat/SER_rss_lambda1_res.rds
tests/testthat/est_V_debug.rds
tests/testthat/full_data_1_sim_gaussian_null_1.rds
tests/testthat/helper_testthat.R
tests/testthat/objective_original_res.rds
tests/testthat/objective_rss_lambda0_res.rds
tests/testthat/objective_rss_lambda1_res.rds
tests/testthat/singleReg_original_res.rds
tests/testthat/singleReg_rss_lambda0_res.rds
tests/testthat/singleReg_rss_lambda1_res.rds
tests/testthat/susiefit_original_res.rds
tests/testthat/susiefit_original_res2.rds
tests/testthat/susiefit_original_res3.rds
tests/testthat/susiefit_original_res4.rds
tests/testthat/susierssfit_lambda0_res.rds
tests/testthat/susierssfit_lambda1_res.rds
tests/testthat/test_Eloglik.R tests/testthat/test_Eloglik_rss.R tests/testthat/test_SER_posterior_e_loglik.R tests/testthat/test_SER_posterior_e_loglik_rss.R tests/testthat/test_comput_tf.R tests/testthat/test_compute_colsds.R tests/testthat/test_est_V.R tests/testthat/test_get_ER2.R tests/testthat/test_get_ER2_rss.R tests/testthat/test_get_pip.R tests/testthat/test_get_samples.R tests/testthat/test_init.R tests/testthat/test_intercept_standardize.R tests/testthat/test_null_weight.R tests/testthat/test_prior_weights.R tests/testthat/test_single_effect_regression.R tests/testthat/test_single_effect_regression_rss.R tests/testthat/test_small_resid.R tests/testthat/test_sparse_multiplication.R tests/testthat/test_sparse_safe_colScale.R tests/testthat/test_susie.R tests/testthat/test_susie_XtX_Xty.R tests/testthat/test_susie_beta_se.R tests/testthat/test_susie_get_cs.R tests/testthat/test_susie_get_objective.R tests/testthat/test_susie_rss.R tests/testthat/test_susie_rss_get_objective.R tests/testthat/test_susie_trendfilter.R tests/testthat/test_update_each_effect.R tests/testthat/test_update_each_effect_rss.R
tests/testthat/vbupdate_original_res.rds
tests/testthat/vbupdate_rss_lambda0_res.rds
tests/testthat/vbupdate_rss_lambda1_res.rds
vignettes/finemapping.Rmd vignettes/finemapping_summary_statistics.Rmd vignettes/l0_initialization.Rmd vignettes/mwe.Rmd vignettes/sparse_susie_eval.Rmd vignettes/susie_refine.Rmd vignettes/susie_rss.Rmd vignettes/susierss_diagnostic.Rmd vignettes/trend_filtering.Rmd
vignettes/trendfiltering_derivations.Rnw
vignettes/trendfiltering_derivations.bib
stephenslab/susieR documentation built on June 9, 2025, 2:50 a.m.