NEWS.md

In stephenturner/qqman: Q-Q and Manhattan Plots for GWAS Data

qqman 0.1.9

• Fix package level documentation.

qqman 0.1.8

• Add rmarkdown to Suggests.

qqman 0.1.7

• When logp=FALSE, SNPs can be annotated if their value from the P column is above the threshold given by annotatePval, and not below.

qqman 0.1.6

• Added "URL" and "BugReports" fields to description.
• Updated vignette.

qqman 0.1.5

• Optimizations thanks to XikunHan.

qqman 0.1.4

• Minor fix to location to referenced image for pandoc self-contained README.html generation.

qqman 0.1.3

• Annotate SNPs below a p-value threshold with the annotatePval= option. See vignette for details.
• Annotate the top SNP on each chromosome with the annotateTop= option. See vignette for details.

qqman 0.1.2

• Does not assume that SNPs are evenly distributed across chromosomes when deciding where to place the tick in the center of the chromosome.
• Changed single chromosome x-axis notation to use Mb instead of raw pos
• qq() accepts graphical parameters the same way as manhattan()
• Removed default xlim
• Citation details on package load
• Added axis label options
• Removed ymax argument in favor of allowing user to set ylim in ...
• Option to not take log of p-value

qqman 0.1.1

• Fixed a bunch of typos in the vignette

stephenturner/qqman documentation built on Aug. 25, 2023, 10:17 a.m.