grepSeq: Searches sequences for a given pattern.
In sterlo/kineticWavelets: Small Library for Analysis of PacBio Kinetic Data using wavelets
Description
Usage
Arguments
Value
Author(s)
Examples
Description
The function returns a vector the length of the original
sequence (seqz) that contains a 1 if the position matched
the pattern otherwise 0.
Usage
1
grepSeq(seqz, patternz, returnCounts = T)
Arguments
seqz
Character vector representing the to search
for a pattern.
patternz
Regular expression to search for
returnCounts
if TRUE print the number of
matches.
Value
A vector containing the matches.
Author(s)
Sterling Sawaya sterlingsawaya@gmail.com
Examples
1
2
3
grepSeq('ATCTCTCTTCTCTTC','TC')
# 6 regions found
# [1] 0 1 1 1 1 1 1 0 1 1 1 1 0 1 1
sterlo/kineticWavelets documentation built on May 30, 2019, 4:42 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
The function returns a vector the length of the original sequence (seqz) that contains a 1 if the position matched the pattern otherwise 0.
Usage
1 | grepSeq(seqz, patternz, returnCounts = T)
|
Arguments
seqz |
Character vector representing the to search for a pattern. |
patternz |
Regular expression to search for |
returnCounts |
if |
Value
A vector containing the matches.
Author(s)
Sterling Sawaya sterlingsawaya@gmail.com
Examples
1 2 3 | grepSeq('ATCTCTCTTCTCTTC','TC')
# 6 regions found
# [1] 0 1 1 1 1 1 1 0 1 1 1 1 0 1 1
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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