Helper functions for ecological Bayesian item response theory in R using MCMCpack

apply2arrays | Returns a vector or array or list of values obtained by... |

BO2dFix | Fix 2d-ordinations |

BOeta | Compute the posterior of the linear predictor in a Bayesian... |

BOflip | Flip axes in a Bayesian ordination |

BOindex | Construct an index for a Bayesian ordination (BO) mcmc object |

BOp | Compute the posterior of the fitted values from a Bayesian... |

BOrotate | Rotate a Bayesian ordination |

BOswitch | Switch axes labels |

dimIRT | The dimensions of an item response theory mcmc |

ecoBayesIRT | Helper functions for ecological Bayesian item response theory... |

extractIRT | Extract and replace pieces of an item response theory mcmc |

findModes | Differentiate between specific forms of uni- and bi-modality |

findRefSite | Find reference site |

fitProbBins | Compare binary data to binned probabilistic expectations |

follows | Follows |

getBO | Get parameters from a Bayesian ordination (getBO) |

give | Give values to certain dimension of an R array |

mcmcFlip | Flip axes in an mcmc object for a Bayesian ordination |

orthProcrustesRotMat | Orthogonal procrustean rotation matrix |

pairComp | All possible pairwise comparisons among columns in binary or... |

plot2dCors | Plot correlations between 2d indirect and 1d direct gradients |

quantile2d | Two-dimensional quantile plot |

redundantPara | Drop redundant parameters |

rgrad | Simulate from posterior distribution of indirect gradients |

swapFlipAxesIRT | Swap and flip axes of an item response theory mcmc |

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