In steveneschrich/AQCR: What the Package Does (One Line, Title Case)

library(affy)
library(simpleaffy)
library(yaqcaffy)

knitr::opts_chunk$set(echo = TRUE)

Overview

This package involves generating many different QC metrics from various packages. Some are likely redundant with each other, particularly with respect to simpleaffy and yaqcaffy. However, rather than try to unify all of the results we just generate them all and store them as an object for reporting.

Data

As example data, we use the base package directory that has a couple of the MAQC data files in it.

target_cels<-generate_QCMetrics("target",".")

Save Results

So that other markdown can read this in, we save to current directory. The other markdowns are parameterized so that you can specify where this data lives.

saveRDS(target_cels,file="target_cels.rds")

steveneschrich/AQCR documentation built on Aug. 10, 2020, 12:48 a.m.