Canonicalize1INS115: Given an insertion and its sequence context, categorize it.
In steverozen/ICAMSxtra: ICAMSxtra
Description
Usage
Arguments
Details
Value
Description
Given an insertion and its sequence context, categorize it.
Usage
1
Canonicalize1INS115(context, ins.sequence, pos, trace = 0, strand)
Arguments
context
ins.sequence
pos
The position of ins.sequence in context.
trace
strand
Details
same as Canonicalize1INS except when
insertion.size == 1 & rep.count == 0
in which the format will be INS:Y:1:0_PF
where Y is C or T, P is the preceding nucleotide, and
F is the following nucleotide
Value
A string that is the canonical representation of
the given insertion type.
steverozen/ICAMSxtra documentation built on Feb. 9, 2022, 7:01 a.m.
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Description Usage Arguments Details Value
Description
Given an insertion and its sequence context, categorize it.
Usage
1 | Canonicalize1INS115(context, ins.sequence, pos, trace = 0, strand)
|
Arguments
context |
|
ins.sequence |
|
pos |
The position of |
trace |
|
strand |
Details
same as Canonicalize1INS except when
insertion.size == 1 & rep.count == 0
in which the format will be INS:Y:1:0_PF
where Y is C or T, P is the preceding nucleotide, and
F is the following nucleotide
Value
A string that is the canonical representation of the given insertion type.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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