API for steverozen/mSigAct.server
Shiny Server for Analyzing Mutational Signature Activities
| Global functions | |
|---|---|
| AddBaseFilename | Source code |
| AddCatalogType | Source code |
| AddErrorMessage | Source code |
| AddFilterStatus | Source code |
| AddNotifications | Man page Source code |
| AddReferenceGenome | Source code |
| AddReferenceGenome2 | Source code |
| AddRegionForSpectra | Source code |
| AddRegionForVCF | Source code |
| AddRunInformation | Man page Source code |
| AddSampleNames | Source code |
| AddTumorColNames | Source code |
| AddVariantCaller | Source code |
| AddZipfileName | Source code |
| AttributionResultsUI | Source code Source code |
| CancerTypeToExposureStatData | Source code |
| CancerTypeToSigSubset | Man page Source code |
| CatchToList | Man page Source code |
| CheckCatalogType | Source code |
| CheckInputsForSpectra | Source code |
| CheckInputsForVCF | Source code |
| CreateSelectCancerTypeWidget | Source code |
| DetermineCatalogTypesForAttribution | Source code |
| GenerateZipFileFromVCFs | Man page Source code |
| GetNamesOfVCFs | Man page Source code |
| GetTumorColNames | Man page Source code |
| HideThreeOptionalTabs | Source code |
| HomeUI | Source code Source code |
| InsertTwoTabs | Source code |
| LoadExampleSpectra | Source code |
| MergeSBSsAsDBSOption | Source code |
| MyRunApp | Source code |
| PlotListOfCatalogsToPdf | Man page Source code |
| PrepareExampleSpectra | Man page Source code |
| PrepareExampleVCFs | Man page Source code |
| PrepareSigsAetiologyTable | Source code |
| PrepareSpectraPlotFromCatalog | Source code |
| PrepareSpectraPlotFromVCF | Source code |
| PrepareThumbnailForSample | Source code |
| ProcessVCFs | Man page Source code |
| ReadAndCheckCatalog | Source code |
| ReadAndCheckVCF | Source code |
| RemoveAllNotifications | Man page Source code |
| RemoveErrorMessage | Source code |
| RunICAMSOnSampleMutectVCFs | Source code |
| RunICAMSOnSampleStrelkaVCFs | Source code |
| ShowPreselectedSigs | Source code |
| ShowSpectraUI | Source code |
| SignatureAttributionUI | Source code |
| TransCountsCatalogToDensity | Man page Source code |
| TutorialUI | Source code Source code |
| UpdateNotificationIDs | Man page Source code |
| UploadSpectra | Source code |
| UploadSpectraUI | Source code |
| UploadVCFFiles | Source code |
| UploadVCFUI | Source code Source code |
| app_server | Source code |
| app_sys | Source code |
| app_ui | Source code Source code |
| get_golem_config | Source code |
| golem_add_external_resources | Source code Source code |
| rep_br | Source code |
| run_app | Man page Source code |
