CancerTypeToSigSubset: Get the subset of signatures for a specified cancer type from...

In steverozen/mSigAct.server: Shiny Server for Analyzing Mutational Signature Activities

Get the subset of signatures for a specified cancer type from a specified tumor cohort

Description

Get the subset of signatures for a specified cancer type from a specified tumor cohort

Usage

CancerTypeToSigSubset(
  cancer.type,
  tumor.cohort = "PCAWG",
  sig.type = "SBS96",
  region = "genome"
)

Arguments

cancer.type	Cancer type of the tumor, e.g. "Biliary-AdenoCA".
tumor.cohort	The cohort of tumors to get information from package PCAWG7. Can be "PCAWG", "TCGA", "other.genome", "other.exome".
sig.type	Type of the signature, e.g. "SBS96".
region	A character string designating a genomic region; see as.catalog and ICAMS.

Value

The set of signatures found present in the specified cancer.type from the specified tumor.cohort.

steverozen/mSigAct.server documentation built on July 9, 2023, 4:52 a.m.