VisiumHnn: 10x Genomics Visium hexagonal nearest neighbor
In stevexniu/spots: Spatial Component Analysis
VisiumHnn R Documentation
10x Genomics Visium hexagonal nearest neighbor
Description
Get hexagonal nearest neighbor distance between 10x Visium spatial barcodes.
Usage
VisiumHnn(path, barcodes)
Arguments
path
Path to the directory contains or to download the HNN distance for Visium barcodes, i.e. "~/Downloads".
barcodes
10x Visium whitelisted spatial barcodes.
Value
A hexagonal distance matrix for selected barcodes.
See Also
available.data LoadData.
Examples
## Not run:
barcodes <- c("AAACAACGAATAGTTC-1", "AAACTTAATTGCACGC-1")
VisiumHnn("~/Downloads/", barcodes)
## End(Not run)
stevexniu/spots documentation built on July 30, 2022, 9:21 a.m.
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| VisiumHnn | R Documentation |
10x Genomics Visium hexagonal nearest neighbor
Description
Get hexagonal nearest neighbor distance between 10x Visium spatial barcodes.
Usage
VisiumHnn(path, barcodes)
Arguments
path |
Path to the directory contains or to download the HNN distance for Visium barcodes, i.e. "~/Downloads". |
barcodes |
10x Visium whitelisted spatial barcodes. |
Value
A hexagonal distance matrix for selected barcodes.
See Also
available.data LoadData.
Examples
## Not run:
barcodes <- c("AAACAACGAATAGTTC-1", "AAACTTAATTGCACGC-1")
VisiumHnn("~/Downloads/", barcodes)
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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