Man pages for stjude/ChIPseqSpikeInFree
A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications
| BoxplotSF | This function generates boxplot using sacaling factor table.... |
| CalculateSF | calculate scaling factors and save results |
| ChIPseqSpikeInFree | wrapper function - perform ChIP-seq spike-free normalization... |
| CountRawReads | count raw reads for all bins |
| GenerateBins | generate genome-wide bins for counting purpose |
| ParseReadCounts | parse readCounts matrix |
| PlotDistr | This function generates CPMW distribtion curve and barplot... |
| ReadMeta | read in sample metadata file |
