BoxplotSF: This function generates boxplot using sacaling factor table....

In stjude/ChIPseqSpikeInFree: A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications

This function generates boxplot using sacaling factor table. It's been included in the last step of ChIPseqSpikeInFree().

Description

This function generates boxplot using sacaling factor table. It's been included in the last step of ChIPseqSpikeInFree().

Usage

BoxplotSF(input, prefix = "test")

Arguments

input	a file/data.frame generated/returned by CalculateSF() or ChIPseqSpikeInFree(). It looks like metadata file but has extra columns SF and COLOR.
prefix	prefix of output filename.

Value

A filename of generated boxplot

Examples

## 1. re-generate boxplot of ChIPseqSpikeInFree scaling factors
## After you run ChIPseqSipkeFree(), a sacaling factor table
## (for example, test_SF.txt) will be generated.

# BoxplotSF(input="test_SF.txt",prefix="test")

stjude/ChIPseqSpikeInFree documentation built on March 28, 2022, 5:36 a.m.