assembleBlocks: assemble image blocks of bold

In stnava/RKRNS: ANTsR Decoding

Description

Assembles the bold study from raw block data

Usage

assembleBlocks(bmask, aalimg, labs, datadir, imagepostfix,
  assembledDesignOutPrefix, assembledImageOutPrefix, dmat, usedesignrow,
  imat = NA, ncompcor = 6, zscore = TRUE, spatialsmooth = 0)

Arguments

bmask	brain mask - compcor is done within this mask
aalimg	a label image - does not have to be aal
labs	which labels of the above label image to use e.g. c(1,2,3)
datadir	the input data directory
imagepostfix	the image blocks postfix e.g. motioncorr.nii.gz
assembledImageOutPrefix	output file name for assembled bold file - will be read if it already exists (rather than reassembled)
usedesignrow	organizational boolean tracking which parts of the design file have concurrent BOLD images, useful for sanity checks
imat	the current estimate of the assembled image matrix
zscore	should we zscore each voxel?
assembledBlocksOutPrefix	output file name for assembled design file - will be read if it already exists (rather than reassembled)
spatialsmoothing	scalar value greater than or equal to zero that controls voxel-wise smoothing in 4D

Value

list is output containing organizational variables for design matrix

Author(s)

Avants BB, Phillips JS

Examples

## Not run: 
assembly2<-assembleBlocks( bmask, aalimg, labs, datadir, imagepostfix,  dfn, afn, dmat, usedesignrow, imat )

## End(Not run)

stnava/RKRNS documentation built on May 30, 2019, 7:21 p.m.