Files in stp4freedom/GWhEAT
Performed GWAS in a fast and efficient manner
.Rbuildignore
.gitignore
BLINK-master/AMDAPPSDK-3.0.zip
BLINK-master/BLINK_User_Manual.pdf
BLINK-master/README.md
BLINK-master/UUID/Mac/get_UUID
BLINK-master/UUID/readMe
BLINK-master/blink.exe
BLINK-master/blink_linux
BLINK-master/blink_linux_parallel
BLINK-master/blink_mac
BLINK-master/demo_data/PLINK/myData.bed
BLINK-master/demo_data/PLINK/myData.bim
BLINK-master/demo_data/PLINK/myData.fam
BLINK-master/demo_data/PLINK/myData.txt
BLINK-master/demo_data/blink_binary/myData.map
BLINK-master/demo_data/blink_binary/myData.pos
BLINK-master/demo_data/blink_binary/myData.pre
BLINK-master/demo_data/blink_binary/myData.txt
BLINK-master/demo_data/blink_binary/myData.val
BLINK-master/demo_data/hapmap/myData.hmp
BLINK-master/demo_data/hapmap/myData.txt
BLINK-master/demo_data/numeric/myData.dat
BLINK-master/demo_data/numeric/myData.map
BLINK-master/demo_data/numeric/myData.txt
BLINK-master/demo_data/vcf/myData.txt
BLINK-master/demo_data/vcf/myData.vcf
BLINK-master/get_pvalue.cl
BLINK-master/get_pvalue_all.cl
BLINK-master/get_xw.cl
BLINK-master/get_xw_xy.cl
BLINK-master/maize_raw_data_BLINK.R
BLINK-master/synthetic_genotype_data.R
BLINK-master/to_do_list
CROPS545_Covariates.txt
CROPS545_Phenotype.txt
DESCRIPTION
EarHT_GWAS_result.txt
GAPIT_Tutorial_Data.zip
GAPIT_Tutorial_Data/Copy of Q_First_Three_Principal_Components.txt
GAPIT_Tutorial_Data/Input_Matrix_for_GS_Heat_Map.txt
GAPIT_Tutorial_Data/KSN.txt
GAPIT_Tutorial_Data/mdp_SNP_information.txt
GAPIT_Tutorial_Data/mdp_SNP_information1.txt
GAPIT_Tutorial_Data/mdp_SNP_information2.txt
GAPIT_Tutorial_Data/mdp_SNP_information3.txt
GAPIT_Tutorial_Data/mdp_genotype_chr1.hmp.txt
GAPIT_Tutorial_Data/mdp_genotype_chr10.hmp.txt
GAPIT_Tutorial_Data/mdp_genotype_chr2.hmp.txt
GAPIT_Tutorial_Data/mdp_genotype_chr3.hmp.txt
GAPIT_Tutorial_Data/mdp_genotype_chr4.hmp.txt
GAPIT_Tutorial_Data/mdp_genotype_chr5.hmp.txt
GAPIT_Tutorial_Data/mdp_genotype_chr6.hmp.txt
GAPIT_Tutorial_Data/mdp_genotype_chr7.hmp.txt
GAPIT_Tutorial_Data/mdp_genotype_chr8.hmp.txt
GAPIT_Tutorial_Data/mdp_genotype_chr9.hmp.txt
GAPIT_Tutorial_Data/mdp_genotype_test.hmp.txt
GAPIT_Tutorial_Data/mdp_numeric.txt
GAPIT_Tutorial_Data/mdp_numeric1.txt
GAPIT_Tutorial_Data/mdp_numeric2.txt
GAPIT_Tutorial_Data/mdp_numeric3.txt
GAPIT_Tutorial_Data/mdp_traits.txt
GAPIT_Tutorial_Data/mdp_traits_validation.readme.txt
GAPIT_Tutorial_Data/mdp_traits_validation.txt
GAPIT_Tutorial_Data/xv.txt
GWAS_apply_demo.Rmd
GWAS_test_demo.Rmd
GWhEAT.Rproj
Homework4_GWhEAT.Rmd
Homework4_GWhEAT.html
Homework_4.Rmd
NAMESPACE
R/Function_Significance_Error_Tests.R
R/Function_fix_Dep.R
R/Function_manhattan.R
R/Function_qqplot.R
R/GWAS_apply.R
R/GWAS_rapid.R
R/GWAS_test.R
README.md
Reference_Manual.pdf
Sim_GWAS_result.txt
User_Manual_Tutorial.Rmd
User_Manual_Tutorial.html
blink.exe
man/GWASapply.Rd
man/GWASapply_rapid.Rd
man/GWAStest.Rd
man/fix_Dep.Rd
man/manhattan_plot.Rd
man/power.fdr.Rd
man/qq_plot.Rd
mdp_SNP_information.txt
myData.cov
myData.dat
myData.map
myData.txt
wheatclipart.png
