GWASapply_rapid: Rapid GWAS with PCA
In stp4freedom/GWhEAT: Performed GWAS in a fast and efficient manner
Description
Usage
Arguments
Value
Description
Rapid GWAS with PCA
Usage
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GWASapply_rapid(
pheno = NULL,
geno = NULL,
Cov = NULL,
PCA.M = 3,
cutoff = NULL
)
Arguments
pheno
file with numeric phenotypic values
geno
data.frame with genotype calls coded as 0,1,2.
Cov
numeric data.frame with covariates values
PCA.M
number of principal components to use default is 3
cutoff
If cutoff is default, uses Bonferroni; 0.05/number of SNPs
Value
GWAS P-values
stp4freedom/GWhEAT documentation built on April 3, 2020, 4:21 a.m.
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Description Usage Arguments Value
Description
Rapid GWAS with PCA
Usage
1 2 3 4 5 6 7 | GWASapply_rapid(
pheno = NULL,
geno = NULL,
Cov = NULL,
PCA.M = 3,
cutoff = NULL
)
|
Arguments
pheno |
file with numeric phenotypic values |
geno |
data.frame with genotype calls coded as 0,1,2. |
Cov |
numeric data.frame with covariates values |
PCA.M |
number of principal components to use default is 3 |
cutoff |
If cutoff is default, uses Bonferroni; 0.05/number of SNPs |
Value
GWAS P-values
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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