plot_output: Visualize metabolism model results

In streampulse/StreamPULSE: Run Stream Metabolism Models on StreamPULSE data

Visualize metabolism model results

Description

Generates a Shiny R visualization similar to those found on the StreamPULSE data portal.

Usage

plot_output(model_out)

Arguments

model_out

the output of fit_metabolism.

Value

Opens a shiny app in default browser via localhost.

Author(s)

Mike Vlah, [e-mail]

See Also

request_data for acquiring StreamPULSE data; prep_metabolism for organizing data and acquiring additional variables, and fit_metabolism for fitting models to data and predicting metabolism.

Examples

streampulse_data = request_data(sitecode='NC_Eno',
  startdate='2016-06-10', enddate='2016-10-23')

fitdata = prep_metabolism(d=streampulse_data, type='bayes',
  model='streamMetabolizer', interval='15 min',
  rm_flagged=list('Bad Data', 'Questionable'), fillgaps=fillgaps,
  zq_curve=list(sensor_height=NULL, Z=Z_data, Q=Q_data,
  fit='power', plot=TRUE), estimate_areal_depth=TRUE)

modelfit = fit_metabolism(fitdata)

plot_output(modelfit)

streampulse/StreamPULSE documentation built on Nov. 2, 2024, 9:54 p.m.