tests/testthat/_snaps/doi.md

In subugoe/biblids: Working with bibliometric identifiers

helper creates proper records

{
  "type": "list",
  "attributes": {
    "names": {
      "type": "character",
      "attributes": {},
      "value": ["prefix", "suffix"]
    },
    "class": {
      "type": "character",
      "attributes": {},
      "value": ["biblids_doi", "vctrs_rcrd", "vctrs_vctr"]
    }
  },
  "value": [
    {
      "type": "character",
      "attributes": {},
      "value": ["10.1038", "10.1000", "10.1007"]
    },
    {
      "type": "character",
      "attributes": {},
      "value": ["nphys1170", null, "978-3-642-65840-2_5"]
    }
  ]
}

fields are cast from more constrained types

{
  "type": "list",
  "attributes": {
    "names": {
      "type": "character",
      "attributes": {},
      "value": ["prefix", "suffix"]
    },
    "class": {
      "type": "character",
      "attributes": {},
      "value": ["biblids_doi", "vctrs_rcrd", "vctrs_vctr"]
    }
  },
  "value": [
    {
      "type": "character",
      "attributes": {},
      "value": ["10.1000"]
    },
    {
      "type": "character",
      "attributes": {},
      "value": ["norf"]
    }
  ]
}

fields are recycled

{
  "type": "list",
  "attributes": {
    "names": {
      "type": "character",
      "attributes": {},
      "value": ["prefix", "suffix"]
    },
    "class": {
      "type": "character",
      "attributes": {},
      "value": ["biblids_doi", "vctrs_rcrd", "vctrs_vctr"]
    }
  },
  "value": [
    {
      "type": "character",
      "attributes": {},
      "value": ["10.1000", "10.1000"]
    },
    {
      "type": "character",
      "attributes": {},
      "value": ["zap", "zong"]
    }
  ]
}

doi bad syntax error message is ok

* All values must be valid DOI syntax.
x Found 1 bad `prefix`(es) at position(s) 3
x Found 2 bad `suffix`(es) at position(s) 2 and 3
i Try casting with `as_doi()`.

DOIs can be coerced

{
  "type": "list",
  "attributes": {
    "names": {
      "type": "character",
      "attributes": {},
      "value": ["prefix", "suffix"]
    },
    "class": {
      "type": "character",
      "attributes": {},
      "value": ["biblids_doi", "vctrs_rcrd", "vctrs_vctr"]
    }
  },
  "value": [
    {
      "type": "character",
      "attributes": {},
      "value": ["10.1000", "10.1000"]
    },
    {
      "type": "character",
      "attributes": {},
      "value": ["foo", "zap"]
    }
  ]
}

{
  "type": "list",
  "attributes": {
    "names": {
      "type": "character",
      "attributes": {},
      "value": ["prefix", "suffix"]
    },
    "class": {
      "type": "character",
      "attributes": {},
      "value": ["biblids_doi", "vctrs_rcrd", "vctrs_vctr"]
    }
  },
  "value": [
    {
      "type": "character",
      "attributes": {},
      "value": ["10.1000", "10.1000"]
    },
    {
      "type": "character",
      "attributes": {},
      "value": ["frotz", "qux"]
    }
  ]
}

DOIs can be cast to characters

{
  "type": "character",
  "attributes": {},
  "value": ["10.1000/grault", null, "10.1000/thud"]
}

characters can be cast to DOIs

{
  "type": "list",
  "attributes": {
    "names": {
      "type": "character",
      "attributes": {},
      "value": ["prefix", "suffix"]
    },
    "class": {
      "type": "character",
      "attributes": {},
      "value": ["biblids_doi", "vctrs_rcrd", "vctrs_vctr"]
    }
  },
  "value": [
    {
      "type": "character",
      "attributes": {},
      "value": ["10.1594", "10.1594", "10.1000", "10.1000", null, null]
    },
    {
      "type": "character",
      "attributes": {},
      "value": ["PANGAE.726855", "GFZ.GEOFON.gfz2009kciu", "182", "7", null, null]
    }
  ]
}

DOIs are printed and formatted

[1] "10.1038/nphys1170"           NA                           
[3] "10.1007/978-3-642-65840-2_5"

{
  "type": "character",
  "attributes": {
    "class": {
      "type": "character",
      "attributes": {},
      "value": ["knit_asis"]
    },
    "knit_cacheable": {
      "type": "logical",
      "attributes": {},
      "value": [null]
    }
  },
  "value": ["- [`https://doi.org/10.1038/nphys1170`](https://doi.org/10.1038/nphys1170)\n", "- `NA`\n", "- [`https://doi.org/10.1007/978-3-642-65840-2_5`](https://doi.org/10.1007/978-3-642-65840-2_5)\n"]
}

{
  "type": "character",
  "attributes": {
    "class": {
      "type": "character",
      "attributes": {},
      "value": ["knit_asis"]
    },
    "knit_cacheable": {
      "type": "logical",
      "attributes": {},
      "value": [null]
    }
  },
  "value": ["- [`doi:10.1038/nphys1170`](https://doi.org/10.1038/nphys1170)\n", "- `NA`\n", "- [`doi:10.1007/978-3-642-65840-2_5`](https://doi.org/10.1007/978-3-642-65840-2_5)\n"]
}

{
  "type": "character",
  "attributes": {
    "class": {
      "type": "character",
      "attributes": {},
      "value": ["knit_asis"]
    },
    "knit_cacheable": {
      "type": "logical",
      "attributes": {},
      "value": [null]
    }
  },
  "value": ["[`https://doi.org/10.1038/nphys1170`](https://doi.org/10.1038/nphys1170), `NA` and [`https://doi.org/10.1007/978-3-642-65840-2_5`](https://doi.org/10.1007/978-3-642-65840-2_5)"]
}

DOIs make pretty tibble columns

# A tibble: 3 x 1
  `doi_examples(na.rm = FALSE)[1:3]`
  <doi>                             
1 10.1038/nphys1170                 
2 NA                                
3 10.1007/978-3-642-65840-2_5

DOIs with one NA field become all NA

{
  "type": "list",
  "attributes": {
    "names": {
      "type": "character",
      "attributes": {},
      "value": ["prefix", "suffix"]
    },
    "class": {
      "type": "character",
      "attributes": {},
      "value": ["biblids_doi", "vctrs_rcrd", "vctrs_vctr"]
    }
  },
  "value": [
    {
      "type": "character",
      "attributes": {},
      "value": [null, "10.1000"]
    },
    {
      "type": "character",
      "attributes": {},
      "value": ["gizmo", "acme"]
    }
  ]
}

DOIs works with na.omit and friends

{
  "type": "list",
  "attributes": {
    "names": {
      "type": "character",
      "attributes": {},
      "value": ["prefix", "suffix"]
    },
    "class": {
      "type": "character",
      "attributes": {},
      "value": ["biblids_doi", "vctrs_rcrd", "vctrs_vctr"]
    },
    "na.action": {
      "type": "integer",
      "attributes": {
        "names": {
          "type": "character",
          "attributes": {},
          "value": ["2", "3"]
        },
        "class": {
          "type": "character",
          "attributes": {},
          "value": ["omit"]
        }
      },
      "value": [2, 3]
    }
  },
  "value": [
    {
      "type": "character",
      "attributes": {},
      "value": ["10.1000"]
    },
    {
      "type": "character",
      "attributes": {},
      "value": ["1"]
    }
  ]
}

{
  "type": "list",
  "attributes": {
    "names": {
      "type": "character",
      "attributes": {},
      "value": ["prefix", "suffix"]
    },
    "class": {
      "type": "character",
      "attributes": {},
      "value": ["biblids_doi", "vctrs_rcrd", "vctrs_vctr"]
    },
    "na.action": {
      "type": "integer",
      "attributes": {
        "names": {
          "type": "character",
          "attributes": {},
          "value": ["2", "3"]
        },
        "class": {
          "type": "character",
          "attributes": {},
          "value": ["exclude"]
        }
      },
      "value": [2, 3]
    }
  },
  "value": [
    {
      "type": "character",
      "attributes": {},
      "value": ["10.1000"]
    },
    {
      "type": "character",
      "attributes": {},
      "value": ["1"]
    }
  ]
}

single DOIs are extracted

{
  "type": "character",
  "attributes": {},
  "value": ["10.1594/PANGAEA.726855", "10.1119/1.16433", "10.1594/PANGAEA.667386", "10.3866/PKU.WHXB201112303", "10.3352/jeehp.2013.10.3", "10.3972/water973.0145.db", null]
}

multiple DOIs are extracted

{
  "type": "character",
  "attributes": {
    "dim": {
      "type": "integer",
      "attributes": {},
      "value": [5, 2]
    }
  },
  "value": ["10.17487/rfc1149", "10.1016/j.iheduc.2003.11.004", "10.6084/m9.figshare.97218", "10.5194/wes-2019-70", null, null, "10.7875/leading.author.2.e008", "10.1126/science.169.3946.635", "10.5194/wes-5-819-202", null]
}

doi.org handles api works (live API)

[
  {
    "responseCode": 1,
    "handle": "10.1000/1",
    "values": [
      {
        "index": 1,
        "type": "URL",
        "data": {
          "format": "string",
          "value": "http://www.doi.org/index.html"
        },
        "ttl": 86400,
        "timestamp": "2014-09-26T14:40:46Z"
      }
    ]
  },
  {
    "responseCode": 1,
    "handle": "10.1038/nphys1170",
    "values": [
      {
        "index": 1,
        "type": "URL",
        "data": {
          "format": "string",
          "value": "http://www.nature.com/articles/nphys1170"
        },
        "ttl": 86400,
        "timestamp": "2017-12-29T06:49:37Z"
      }
    ]
  }
]

subugoe/biblids documentation built on Dec. 11, 2021, 6:55 a.m.