Sunah Kim (sunny03@snu.ac.kr)
Big-LD is a block partition method based on interval graph modeling of LD bins which are clusters of strong pairwise LD SNPs, not necessarily physically consecutive. The detailed information about the Big-LD can be found in our paper published in bioinformatics.
The Big-LD algorithm and visualization function has been updated and implemented in a new package "gpart". The package "gpart" can be downloaded from bioconductor
The "gpart" has following features.
BigLD
functionnear-nonhrst
and fast
.LDblockHeatmap
functionGPART
LDblockHeatmap()
in "gpart" package..Add the following code to your website.
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