API for surh/AMOR
Abundance Matrix Operations in R
| Global functions | |
|---|---|
| AMOR | Man page |
| AMOR-package | Man page |
| Find | Man page |
| PCA | Man page Source code |
| PCA.Dataset | Man page Source code |
| PCA.default | Man page Source code |
| PCO | Man page Source code |
| PCO.Dataset | Man page Source code |
| PCO.default | Man page Source code |
| beta_diversity | Man page Source code |
| bootstrap_glm | Man page Source code |
| bootstrap_glm.Dataset | Man page Source code |
| bootstrap_glm.default | Man page Source code |
| clean | Man page Source code |
| collapse_by_taxonomy | Man page Source code |
| collapse_by_taxonomy.Dataset | Man page Source code |
| collapse_by_taxonomy.default | Man page Source code |
| collapse_matrix | Man page Source code |
| compare_site_diversity | Man page Source code |
| compare_site_diversity.Dataset | Man page Source code |
| compare_site_diversity.default | Man page Source code |
| create_dataset | Man page Source code |
| findGoodOTUs | Man page Source code |
| findGoodSamples | Man page |
| find_good_samples | Man page Source code |
| g_legend | Source code |
| get_tax_level | Man page Source code |
| heatgg | Man page Source code |
| heatgg.Dataset | Man page Source code |
| heatgg.default | Man page Source code |
| matrix_glm | Man page Source code |
| matrix_glm.Dataset | Man page Source code |
| matrix_glm.default | Man page Source code |
| matrix_glmNB | Man page Source code |
| matrix_glmNB.Dataset | Man page Source code |
| matrix_glmNB.default | Man page Source code |
| measurable_taxa | Man page Source code |
| measurable_taxa.Dataset | Man page Source code |
| measurable_taxa.default | Man page Source code |
| minumum | Man page |
| normalize | Man page Source code |
| number | Man page |
| of | Man page |
| phylogram | Man page Source code |
| phylogram.Dataset | Man page Source code |
| phylogram.default | Man page Source code |
| plotgg | Man page Source code |
| plotgg.PCA | Man page Source code |
| plotgg.PCO | Man page Source code |
| plotgg.site.diversity | Man page Source code |
| plotgg_rankabun | Man page Source code |
| plotgg_rankabun.Dataset | Man page Source code |
| plotgg_rankabun.default | Man page Source code |
| plotgg_rankabun2 | Man page Source code |
| plotgg_rankabun2.Dataset | Man page Source code |
| plotgg_rankabun2.default | Man page Source code |
| plotgg_taxon | Man page Source code |
| plotgg_taxon.Dataset | Man page Source code |
| plotgg_taxon.default | Man page Source code |
| plotgg_var | Man page Source code |
| plotgg_var.Dataset | Man page Source code |
| plotgg_var.default | Man page Source code |
| pool_samples | Man page Source code |
| pool_samples.Dataset | Man page Source code |
| pool_samples.default | Man page Source code |
| print.Dataset | Source code |
| print.heatggclus | Source code |
| print.summary.PCA | Source code |
| print.summary.PCO | Source code |
| print.summary.bootglm | Man page Source code |
| print.summary.matrix.glm | Source code |
| rarefaction | Man page Source code |
| rarefaction.Dataset | Man page |
| rarefaction.default | Man page |
| read.am | Man page Source code |
| reads | Man page |
| remove_samples | Man page Source code |
| remove_taxons | Man page Source code |
| samples | Man page Man page Source code |
| site_diversity | Man page Source code |
| subset.Dataset | Man page Source code |
| summary.PCA | Source code |
| summary.PCO | Source code |
| summary.bootglm | Man page Source code |
| summary.matrix.glm | Man page Source code |
| taxa | Man page Source code |
| theme_blackbox | Man page Source code |
| total_richness | Man page Source code |
| variables | Man page Source code |
| with | Man page |
| write.qiime | Man page Source code |
| write.qiime.Dataset | Man page Source code |
| write.qiime.default | Man page Source code |
