summary_cohort: Summarise cohorts.

In susjoh/genedroppeR: genedroppeR: conduct single-locus genedrop analyses through pedigrees

Summarise cohorts.

Description

Summarise cohorts by number of founders, proportion of individuals genotyped and/or allele frequency information at a given locus.

Usage

summary_cohort(
  id,
  mother = NULL,
  father = NULL,
  cohort = NULL,
  genotype = NULL,
  genotype_delim = ""
)

Arguments

id	vector. Individual IDs
mother	vector. Maternal IDs corresponding to id.
father	vector. Paternal IDs corresponding to id.
cohort	vector (optional). Cohort number (e.g. birth year) corresponding to the id.
genotype	vector. Genotypes IDs corresponding to id.
genotype_delim	char. A character denoting the genotype delimited. Default = ”.

Examples

data(unicorn)
unicorn_summary <- summary_cohort(
  id = unicorn$id,
  mother = unicorn$mother,
  father = unicorn$father,
  cohort = unicorn$cohort,
  genotype = unicorn$Horns
)
plot_genedrop_cohort(unicorn_summary)

susjoh/genedroppeR documentation built on Sept. 9, 2024, 3:19 a.m.