sampleHaploids: Simulate recombination events in R - output haplotypes
In susjoh/pedantry: Simulate haplotypes with recombination in pedigrees
View source: R/simulateGenotypesHaploids.R
Description
This function simulates genotypes within a pedigree, based on centiMorgan map
distances. Outputs genotypes as a GenABEL gwaa object.
Usage
1
sampleHaploids(haploid.ids, haploid.parent, PLINK.prefix)
Arguments
haploid.ids
vector of IDs to sample haploid genome from
haploid.parent
parent who produced the haploid offspring, "MOTHER" or "FATHER"
PLINK.prefix
default is a randomly generated name.
susjoh/pedantry documentation built on Aug. 23, 2019, 11:35 a.m.
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View source: R/simulateGenotypesHaploids.R
Description
This function simulates genotypes within a pedigree, based on centiMorgan map distances. Outputs genotypes as a GenABEL gwaa object.
Usage
1 | sampleHaploids(haploid.ids, haploid.parent, PLINK.prefix)
|
Arguments
haploid.ids |
vector of IDs to sample haploid genome from |
haploid.parent |
parent who produced the haploid offspring, "MOTHER" or "FATHER" |
PLINK.prefix |
default is a randomly generated name. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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