todo.md

In sustainablefarms/farm_biodiversity_app: An App Predicting Bird Biodiversity on Farms

output: pdf_document: default html_document: default

High Priority

• be consistent with warnings - choose notifications in the bottom right or otherwise - need to change this around the loading of woody cover
• error: Error in : arguments imply differing number of rows: 0, 1
• in newXocc_fromselecteda
• error: Warning: Error in [.data.frame: undefined columns selected
• also in newXocc_fromselected
• representative year
• look for any regions of poor residuals or LVs
• add coppiced regrowth (or remove from data set), planting age to model
• LV/residuals based on sa2 region
• a model with better detection components
• look at residuals and LV for Grey-crowned Babbler and Superb Parrot
• Increasing in likelihood Superb Parrot
• Reset on pressing out1_next??

Less Priority

• Include the 'interpreting outputs of BirdCast' section from the manuscript in the User Guide itself
• make idle timeout 30min
• at locationS - About page
• bold 'found in' woodlands that lack midstorey _

  --> for woodland type

• auto panning/zooming to the selected region isn't working well.
• +/- in map is on top of selectize in patch attributes. Set its z-index to 1001 or higher
• make some tests
• sort by length selectize with padding that can't be found: .form-group add margin-top: -1rem
• estimation complete: restart, go back to change your scenarios, visit SF website, go out and look at your birds! We hope you find some of the birds on your farm.
• include A comparison between Scenario 1 and Scenario 2.
• photo of Noisy Miner into the FAQ
• update readme and help
• prepopulated selectlocation need to have the polygon highlighted on the leaflet map
• info on richness calculation - it is just the sum of estimated occupancy probabilities

• waiting thingy for downloading probability table

• BirdCast fonts in the pdf, with tagline

• show the little heading on the polygons for prepopulated regions

• error - selected input box for region and then clicked a region map

• I couldn't replicate this

• functionality

• resolve the bug with leaflet for woodland patches after going back
• link to FAQs
• FAQs
  • what if the 3km canopy cover is all from a single large patch?
  • try to avoid repeating content
• FAQs: Specific content that answers a question
• redirection pages for birdchecker
• a warning that javascript is required

• spinners for the other prediction plots

• styling 1d

• be considerate of spacing
• convert About, User Guide etc to a hamburger menu for mobiles?
• a few margin and color things,

• check that text is larger than old birdchecker

• words

• "representative year"
• in report and elsewhere note that the app does not look at the open spaces, just the woodlands
• User Guide - is how to use the app. For the user.
• About

• About - purpose of the app, key features/attributes, business case, ambition, why does the app exist. Top level, purpose driven

• report 1d

• State of Australia strange appostrophe direction
• polishing (days)

• waiters for the prediction plots

• send to aus|smc?

High Priority:

• make 50m gap language clearer - see email with Ange
• compute_richness use poccupancy_margotherspeciespmaxsite() -- see a branch

Regular Priority: + highlight the vulnerable species in the graphs using a different color or something + set wvc for patch based on region + onespecwords() -> onespec_occdesc() + patchincompletewarn() -> attrincomplete() + vulnerablespeciesUI() -> avulnerablespeciesUI() + wcf could be describes as 'proportion of vertical view that is blocked by foliage' + submit to shiny app contest

• event tracking:

• track more inputs

  • change rainfall
  • number of patches

• when calling use_waiter specify the spinner(s) used

• call plotly functions with plotly:: rather than a full imports

• extra.html is imported for each predictions module
• mostlikely plotly is building for each option - consider just rearranging like the full species plot

Inputs

• woody canopy in raw areas, not percentages

Caveats

• get max patch size for model (Ask Dan for patch areas, to look for maximum in our data)
• test on other woodlands

Outputs

Other

• Get onto SF website

Love to do

• trait indications
• show birds of particular body size
• multiple named references
• Example pictures of woody canopy
• better relative plots

sustainablefarms/farm_biodiversity_app documentation built on Sept. 13, 2023, 9:28 p.m.