Files in sustainablefarms/linking-data

OBSOLETE: Linking Data Project R Package

R/DS_residuals.R R/DS_residuals_plots.R R/DS_residuals_raw.R R/Enum_compare.R R/LV_covar_plots.R R/RVofrandomselectRV.R R/SF_sql_reading.R R/add_times_colnames_tseries.R R/as_list_format.R R/avoid_multicollinearity.R R/bricks_of_rs_products.R R/bugsdataconversion.R R/build_filename_list.R R/calcpredictions.R R/calcspeciesprobs_singlesitetheta.R R/csv_import.R R/divide_into_tiles.R R/elpd_compare.R R/expected_biodiversity.R R/expected_biodiversity_multisite.R R/extend_detectionoccupancy.R R/extract_brick_files.R R/extract_ts_wald.R R/focal_bylayer.R R/get_theta.R R/get_tilecodes.R R/gpp_vals.R R/lapplyquery.R R/likelihood.R R/loc_onlineinfo.R R/model_quality_stats.R R/numspec_fulldistribution.R R/order_boral.R R/pdetection_occupied.R R/poccupy.R R/predoccupancy_standalone.R R/prepdesignmat.R R/prepdesignmat1.R R/prepdesignmat2.R R/return_current_time.R R/run_detectionoccupancy.R R/simulate_fit.R R/sites_2_sp_points.R R/vif_analysis.R R/woody_vals_buffer.R README.md analysis/0_1_SWS_bird_abundance_visualisations.Rmd analysis/0_2_explore_GrazingData_GrazingStudy_Stewardship.Rmd analysis/0_3_compatiability_Garnett_bird_traits.Rmd analysis/1_10_check_extracted_RS_data.Rmd analysis/1_2_checking_albers_tiles.Rmd inst/rmarkdown/templates/ModelAssessment/skeleton/skeleton.Rmd inst/rmarkdown/templates/basic/skeleton/skeleton.Rmd man/DunnSmythResiduals.Rd man/DunnSmythResidualsRaw.Rd man/Enum_compare.Rd man/LatentVariablePlots.Rd man/add_colnames_times_tseries.Rd man/apply.designmatprocess.Rd man/artificial_runjags.Rd man/as_list_format.Rd man/brick_gpp.Rd man/bugsvar2array.Rd man/build_filename_list.Rd man/detectednumspec.Rd man/divide_into_tiles.Rd man/elpd_compare.Rd man/expectedspeciesnum.theta.Rd man/extend.fit.Rd man/extract_brick_files.Rd man/extract_ts_wald.Rd man/focal_bylayer.Rd man/getSFtable.Rd man/get_theta.Rd man/get_tilecodes.Rd man/gpp_vals.Rd man/gvifs_lm.Rd man/lapplyquery.Rd man/likelihoods.fit.Rd man/ll2webdata.Rd man/modelqualstats.Rd man/pdetection_occupied.ModelSite.theta.Rd man/pdetection_occupied_raw.Rd man/plot_residuals.Rd man/poccupy.ModelSite.Rd man/predict_standalone_nolv.Rd man/predictedprobabilities.Rd man/predsumspecies.Rd man/predsumspeciesRV.Rd man/remove_bycorrvif.Rd man/run.detectionoccupancy.Rd man/simulate_fit.Rd man/sumRV_margrow.Rd man/sws_sites_2_spdf.Rd man/woody_vals_buffer.Rd references/Hui_2016_MEE.pdf references/TERN_airborne_ProductSpecification.pdf references/Yebra_etal_2015.pdf references/Yebra_etal_2018.pdf scripts/1_10_reading_PCT_data.R scripts/1_11_reading_TWI_data.R scripts/1_12_extract_soilmoisture.R scripts/1_13_bytile_gpp.R scripts/1_14_bytile_woodyveg.R scripts/1_14_bytile_woodyveg_check_2019.R scripts/1_15_extract_worldclim.R scripts/1_16_extract_RS_of_polygons.R scripts/1_1_extract_daily_precipitation.R scripts/1_2_extract_8d_gpp.R scripts/1_3_extract_fmc.R scripts/1_4_extract_TreeCover.R scripts/1_5_extract_WoodyCover.R scripts/1_6_extract_GADEA_FC.R scripts/1_7_extract_CLUM.R scripts/1_8_extract_GA_highway_water_maps.R scripts/1_9_vals_from_m1b.R scripts/2_1_data_import_site_observations.R scripts/2_2_data_import_remote_sensing.R scripts/5_1_plots_for_meeting_20191219.R scripts/5_2_sws_maps_multipanel.R scripts/5_2_sws_maps_multipanel_2.R scripts/5_3_victoria_maps.R scripts/5_4_Feb_2020_teammeeting_displays.R scripts/6_shiny_app_testing.R scripts/7_4_cutdown_7_4_11_2LV_model.R scripts/9_1_clean_detectiondata.R scripts/9_2_clean_occupancydata.R scripts/9_importdataforothersites.R side_projects/GPP_NPP_ForClaireF.R side_projects/nectarivores.R splitrepo.md tests/run_testthattests.R tests/testthat/test-DS_residuals.R tests/testthat/test-SF_sql_reading.R tests/testthat/test-bugsvar2array.R tests/testthat/test-calcs_saved_fit.R tests/testthat/test-expectedbiodiversity.R tests/testthat/test-fulldistribution_numspecies.R tests/testthat/test-likelihoods.R tests/testthat/test-predcalculations.R tests/testthat/test-prepdesignmat-preptwiceerror.R tests/testthat/test-prepdesignmat.R tests/testthat/test-rundetectionoccupancy.R tests/testthat/test-simulationmethods.R tests/testthat/test-standalone.R tests/testthat/test-whole-identical-sites.R tests/testthat/test-whole-noiterations.R tests/testthat/test-whole-variety-nolv.R tests/testthat/test-whole-variety-wlv-60species.R tests/testthat/test-whole-variety-wlv.R vignettes/presenting_raster_bricks.Rmd vignettes/using_raster_to_extract.Rmd