Man pages for sustainablefarms/linking-data
OBSOLETE: Linking Data Project R Package
| add_colnames_times_tseries | Add column names and read row names into times |
| apply.designmatprocess | Preprocessing Input Data |
| artificial_runjags | Create a fully artificial fitted object |
| as_list_format | A quick replacement to 'runjags::list.format()' that does... |
| brick_gpp | Extract Bricks of Remote Sensing Data |
| bugsvar2array | Converting Parameter Values in BUGS Name and Format to Arrays... |
| build_filename_list | Create list of Filenames |
| detectednumspec | The number of observed species in a matrix of observation... |
| divide_into_tiles | Divide points into tiles |
| DunnSmythResiduals | Dunn-Smyth Residuals for Detection and Occupancy for Fitted... |
| DunnSmythResidualsRaw | Dunn-Smyth Residuals for Detection and Occupancy for Given... |
| elpd_compare | Compare Sitewise Differences in Expected Log Posterior... |
| Enum_compare | Compare Expected Number of Species at ModelSites |
| expectedspeciesnum.theta | Expected Biodiversity Across Multiple Sites |
| extend.fit | Extend MCMC chains of fitted model |
| extract_brick_files | Extract RasterBrick from List of Filenames |
| extract_ts_wald | Extact Timeseries of Values for Spatial Points |
| focal_bylayer | Apply raster's focal function by layer |
| getSFtable | Extract table from connection to Sustainable Farms SQL... |
| get_theta | A helper function to get a vector of parameters from a fitted... |
| get_tilecodes | Intersecting Albers Australian Tile Codes |
| gpp_vals | Extract GPP values at points |
| gvifs_lm | Compute VIF using CAR package |
| lapplyquery | SQL Helper Function: Apply Query multiple times, substituting... |
| LatentVariablePlots | Plot Estimated Latent Variables Against Covariates |
| likelihoods.fit | Computing Likelihoods for Occupancy Detection Models |
| ll2webdata | Download online data for spatial locations that are needed... |
| modelqualstats | Compute Model Quality Information |
| pdetection_occupied.ModelSite.theta | Probability of detection and occupation for a single... |
| pdetection_occupied_raw | Probability of Detection Given Occupied |
| plot_residuals | Plotting of Dunn-Smyth Residuals |
| poccupy.ModelSite | Probability of each species occupancy marginal across other... |
| predictedprobabilities | Predicted Probabilities ** would be great to test these... |
| predict_standalone_nolv | Standalone Occupancy Probabilities and Biodiversity Across... |
| predsumspecies | Expected Biodiversity |
| predsumspeciesRV | Compute predicted distributions of number species detected |
| remove_bycorrvif | Removing variables using ViF and correlation |
| run.detectionoccupancy | Fit detection occupancy models using runjags. |
| simulate_fit | Simulate observations from parameters of a fitted object. |
| sumRV_margrow | For a list of random variables, return random variable that... |
| sws_sites_2_spdf | Convert SWS Site Data in an SPDF |
| woody_vals_buffer | Extract mean woody cover within a buffer of a point |
