Files in suziebrown/miniproject1

.Rbuildignore

DESCRIPTION

Latex/condSMC.aux

Latex/condSMC.bbl

Latex/condSMC.blg

Latex/condSMC.log

Latex/condSMC.pdf

Latex/condSMC.synctex.gz

Latex/condSMC.tex

Latex/eg_WF.pdf Latex/eg_genWF.pdf Latex/kalman_n16_100reps_line.pdf Latex/kalman_n2_1000reps_line.pdf Latex/moran_fullcoal.pdf

Latex/notes_moehle.aux

Latex/notes_moehle.bbl

Latex/notes_moehle.blg

Latex/notes_moehle.log

Latex/notes_moehle.pdf

Latex/notes_moehle.synctex.gz

Latex/notes_moehle.tex

Latex/notes_popgen.aux

Latex/notes_popgen.bbl

Latex/notes_popgen.blg

Latex/notes_popgen.dvi

Latex/notes_popgen.log

Latex/notes_popgen.pdf

Latex/notes_popgen.synctex.gz

Latex/notes_popgen.tex

Latex/report.aux

Latex/report.bbl

Latex/report.blg

Latex/report.dvi

Latex/report.log

Latex/report.pdf

Latex/report.synctex.gz

Latex/report.tex

Latex/scalemoran_fullcoal.pdf

Latex/smc.bib

Latex/texput.log

Latex/treeht_std_1000reps.pdf

NAMESPACE

Plots/README.txt

Plots/SMC_tree_height/180604_dodgy/treeht_cond_1000reps_NAsmaxed_n16.pdf Plots/SMC_tree_height/180604_dodgy/treeht_cond_1000reps_NAsmaxed_n2.pdf Plots/SMC_tree_height/Obsolete/treeheight2_condSMC.pdf Plots/SMC_tree_height/Obsolete/treeheight2_stdSMC.pdf Plots/SMC_tree_height/Obsolete/treeheight3_condSMC.pdf Plots/SMC_tree_height/Obsolete/treeheight4_condSMC.pdf Plots/SMC_tree_height/Obsolete/treeheight5_condSMC.pdf Plots/SMC_tree_height/Obsolete/treeheight_condSMC.pdf Plots/SMC_tree_height/Obsolete/treeheight_stdSMC.pdf Plots/SMC_tree_height/Obsolete/treeht_overN.pdf Plots/SMC_tree_height/Obsolete/treeht_overN_condSMC.pdf Plots/SMC_tree_height/Obsolete/treeht_overN_stdSMC.pdf Plots/SMC_tree_height/kalman_immortal/kalman_n16_100reps_line.pdf Plots/SMC_tree_height/kalman_immortal/kalman_n16_100reps_pts.pdf Plots/SMC_tree_height/kalman_immortal/kalman_n2_1000reps_line.pdf Plots/SMC_tree_height/kalman_immortal/kalman_n2_1000reps_pts.pdf Plots/SMC_tree_height/kalman_immortal/treeht_std_1000reps.pdf Plots/SMC_tree_height/n_16/condSMC_RTS_0sd.pdf Plots/SMC_tree_height/n_16/condSMC_RTS_1sd.pdf Plots/SMC_tree_height/n_16/condSMC_RTS_2sd.pdf Plots/SMC_tree_height/n_16/condSMC_RTS_3sd.pdf Plots/SMC_tree_height/n_16/condSMC_RTS_gg.pdf Plots/SMC_tree_height/n_16/condSMC_RTS_overlaid.pdf Plots/SMC_tree_height/n_16/condSMC_RTS_panes.pdf Plots/SMC_tree_height/treeht_SMC_1.pdf Plots/SMC_tree_height/treeht_SMC_2.pdf Plots/SMC_tree_height/treeht_cSMC_1.pdf Plots/SMC_tree_height/treeht_cSMC_2.pdf Plots/SMC_tree_height/treeht_cSMC_3.pdf Plots/WF_Moran_sims/WFancestry.pdf Plots/WF_Moran_sims/eg_WF.pdf Plots/WF_Moran_sims/eg_genWF.pdf Plots/WF_Moran_sims/moran_fullcoal.pdf Plots/WF_Moran_sims/scaled_coaltime_moran.pdf Plots/WF_Moran_sims/scaled_coaltime_wf.pdf Plots/WF_Moran_sims/scalemoran_fullcoal.pdf Plots/WF_Moran_sims/wf_moran_comparison.pdf R/OU_RTS_smooth.R R/OU_sim.R R/SMC.R R/ancestry_size.R R/class_defn.R R/genealogy_plot.R R/moran_sim.R R/stirling2.R R/suziecolours.R R/trace_ancestry.R R/wf_sim.R R_testscripts/Obsolete/plot_treeheight.R R_testscripts/Obsolete/plot_treeht_overN.R R_testscripts/Obsolete/toydata.R R_testscripts/Obsolete/treeht_parallel.R R_testscripts/RTS_smooth_test.R R_testscripts/create_ou_data.R R_testscripts/experiments_tidy.R R_testscripts/ggplotting.R R_testscripts/test_moran_coal.R

Sim_data/180604/treeht_cond_n16_0sd.csv

Sim_data/180604/treeht_cond_n16_1sd.csv

Sim_data/180604/treeht_cond_n16_2sd.csv

Sim_data/180604/treeht_cond_n16_3sd.csv

Sim_data/180604/treeht_cond_n2_0sd.csv

Sim_data/180604/treeht_cond_n2_1sd.csv

Sim_data/180604/treeht_cond_n2_2sd.csv

Sim_data/180604/treeht_cond_n2_3sd.csv

Sim_data/180604/treeht_std_n16.csv

Sim_data/180604/treeht_std_n2.csv

Sim_data/Obsolete/treeHeight1

Sim_data/Obsolete/treeHeight2

Sim_data/Obsolete/treeHeight3_overN_condSMC

Sim_data/Obsolete/treeHeight4_overN_stdSMC

Sim_data/Obsolete/treeHeight5_overN_condSMC

Sim_data/Obsolete/treeHeight6_overN_condSMC

Sim_data/n_16/readme.R

Sim_data/n_16/treeht_out_0sd.csv

Sim_data/n_16/treeht_out_1sd.csv

Sim_data/n_16/treeht_out_2sd.csv

Sim_data/n_16/treeht_out_3sd.csv

Sim_data/n_2/1000reps/treeht_out_0sd.csv

Sim_data/n_2/1000reps/treeht_out_1sd.csv

Sim_data/n_2/1000reps/treeht_out_2sd.csv

Sim_data/n_2/1000reps/treeht_out_3sd.csv

Sim_data/n_2/100reps/treeht_out_0sd.csv

Sim_data/n_2/100reps/treeht_out_1sd.csv

Sim_data/n_2/100reps/treeht_out_2sd.csv

Sim_data/n_2/100reps/treeht_out_3sd.csv

Sim_data/treeht_overN_condSMC.csv

Sim_data/treeht_overN_condSMC_2.csv

Sim_data/treeht_overN_linear_SMC.csv

Sim_data/treeht_overN_linear_condSMC

Sim_data/treeht_overN_linear_condSMC_2.csv

man/WFsim.Rd man/ancestrySize.Rd man/conditional_SMC.Rd man/hello.Rd man/moranSim.Rd man/ou_rts_smooth.Rd man/ou_sim.Rd man/plot.genealogy.Rd man/plot.samplegenealogy.Rd man/standard_SMC.Rd man/traceAncestry.Rd

miniproject1.Rproj

oudata.csv

suziebrown/miniproject1 documentation built on May 26, 2019, 9:36 a.m.