In svalvaro/ProteoViewer: Generates protein images with peptides colored depending on their intensities.

knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)

ProteoViewer

The goal of ProteoViewer is to analyse the peptide intensities in a proteomics LC-MS/MS experiment. Besides, it provides visualization for the protein topology, Post-translational modifications and protein Coverage.

It relies on the Protter API.

Installation

# install.packages("devtools")
devtools::install_github("svalvaro/ProteoViewer")

Use the shiny app.

Launch the app locally.

library(ProteoViewer)

runProteoViewerApp()

Or access to it trough the web application hosted at: https://proteomics.fgu.cas.cz/ProteoViewer/

Data

ProteoViewer accepts the evidence.txt from MaxQuant or the output from Spectronaut

Example

svalvaro/ProteoViewer documentation built on March 20, 2022, 7:25 p.m.