Man pages for sverchkov/BaselineRegularization
Baseline Regularization
| ancestorConceptProcessor | Create an ancestry concept processor |
| blockwiseFusedLassoSignalApproximator | Blockwise fused lasso signal approximator |
| blockwiseWeightedFusedLassoSignalApproximator | Blockwise weighted fused lasso signal approximator |
| buildFeatureMatrix | Feature matrix builder |
| cdm_some_concept_names | A subset of the OMOP CDM "concept ancestor" table |
| checkKKT4BetaStep | check convergence for beta step |
| checkKKT4BR | check convergence of baseline regularization (BR) |
| checkKKT4MSCCS | check convergence of MSCCS |
| checkL1Optimality | check whether l1 optimality |
| defineBRParameters | Define Baseline Regularization parameters |
| fitBaselineRegularization | Fit baseline regularization |
| fitBR | learn a baseline regularization (BR) model |
| fitMSCCS | Run MSCCS as an initialization for BR |
| getCoefficients | Get Beta Coefficients from fit |
| getConditionEvents | Get condition events from a condition occurrence/era table... |
| getDrugDurationsFromExposure | Infer Drug Durations from the Drug Exposure Table |
| getDrugEvents | Get drug events from drug durations |
| getEventsFromOccurrence | Make events table from occurrence information (internal... |
| getFusedSubgradient | get the subgradient of fused lasso |
| getTable | Get a table, possibly from a database |
| getWls | compute weighted least square |
| inferObservationPeriods | Construct an observation period table from a set of tables |
| isSingleString | Check if an object is a single string |
| omop_concept_names | A subset of the "concept" table for OMOP concepts |
| omop_doi_concept_ancestor | A subset of the "concept ancestor" table for OMOP concepts |
| omop_hoi_conditions_map | A mapping from OMOP HOIs to condition concept IDs |
| passthroughConceptProcessor | Passthrough concept processor |
| prepareBRData | Create data object based on era tables |
| prepareBRDataFromEvents | Generate BR data from event table ( internal function ) |
| synpuf_mini | A mini subset of the synpuf dataset in OMOP CDM |
