What the package does (short line)

Global functions | |
---|---|

accessTable | Source code |

adjacencyToAncestry | Source code |

aggregateAncestries | Source code |

allFullerMatrices | Source code |

ancestries2graph | Source code |

ancestryToAdjacency | Source code |

attachReporters | Source code |

branchBoundAStarOnGraph | Source code |

branchBoundAStarOnTree | Source code |

cleanUpAncestry | Source code |

cleanUpLLP | Source code |

combinePosteriors | Source code |

compute.score.change | Source code |

computeCost | Source code |

cytoscapeThatGraph | Source code |

deriveAncestry | Source code |

edgesFromMatrix | Source code |

enumerateTransitivelyClosedMatrices | Source code |

getBiggerTransitiveGraphs | Source code |

getChildNodes | Source code |

getChildNodesWide | Source code |

getChildrenInToggleSearch | Source code |

getCost | Source code |

getHeuristicScore | Source code |

getHeuristicScoreOld | Source code |

getLogLikelihoods | Source code |

getMLNetwork | Source code |

getNextGraphSearchStates | Source code |

getNextSearchStates | Source code |

getScoreBounds | Source code |

getUncertaintyMatrix | Source code |

groupReporters | Source code Source code |

inclusive.ancestry | Source code |

initSearchNode | Source code |

isGoalNode | Source code |

list2csv | Source code Source code |

log1mexp | Source code |

logicVector | Source code |

lprob.from.lods | Source code |

lprob2lods | Source code |

makeLLL | Source code |

makeLimmaLogProbs | Source code |

makeSearchNode | Source code |

mkContrastMatrix | Source code |

multiStartANetworkSearch | Source code |

multiStartNetworkSearch | Source code |

replaceNAs | Source code |

score.edge.toggles.old | Source code |

score4effect | Source code |

scoreBestTheta | Source code |

scoreEdgeToggles | Source code |

scoreLikelihoodsPerReporter | Source code |

scoreMAPTheta | Source code |

scoreNetwork | Source code |

scoreSimply | Source code |

searchByAStar | Source code |

searchWithSplits | Source code Source code |

showUncertainAncestry | Source code |

signs.match | Source code |

stripDots | Source code |

transitivelyClosed | Source code |

updateBounds | Source code |

whichLastMax | Source code |

whichRandomLateMax | Source code |

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