API for sverchkov/bionetwork
What the package does (short line)

Global functions
accessTable Source code
adjacencyToAncestry Source code
aggregateAncestries Source code
allFullerMatrices Source code
ancestries2graph Source code
ancestryToAdjacency Source code
attachReporters Source code
branchBoundAStarOnGraph Source code
branchBoundAStarOnTree Source code
cleanUpAncestry Source code
cleanUpLLP Source code
combinePosteriors Source code
compute.score.change Source code
computeCost Source code
cytoscapeThatGraph Source code
deriveAncestry Source code
edgesFromMatrix Source code
enumerateTransitivelyClosedMatrices Source code
getBiggerTransitiveGraphs Source code
getChildNodes Source code
getChildNodesWide Source code
getChildrenInToggleSearch Source code
getCost Source code
getHeuristicScore Source code
getHeuristicScoreOld Source code
getLogLikelihoods Source code
getMLNetwork Source code
getNextGraphSearchStates Source code
getNextSearchStates Source code
getScoreBounds Source code
getUncertaintyMatrix Source code
groupReporters Source code Source code
inclusive.ancestry Source code
initSearchNode Source code
isGoalNode Source code
list2csv Source code Source code
log1mexp Source code
logicVector Source code
lprob.from.lods Source code
lprob2lods Source code
makeLLL Source code
makeLimmaLogProbs Source code
makeSearchNode Source code
mkContrastMatrix Source code
multiStartANetworkSearch Source code
multiStartNetworkSearch Source code
replaceNAs Source code
score.edge.toggles.old Source code
score4effect Source code
scoreBestTheta Source code
scoreEdgeToggles Source code
scoreLikelihoodsPerReporter Source code
scoreMAPTheta Source code
scoreNetwork Source code
scoreSimply Source code
searchByAStar Source code
searchWithSplits Source code Source code
showUncertainAncestry Source code
signs.match Source code
stripDots Source code
transitivelyClosed Source code
updateBounds Source code
whichLastMax Source code
whichRandomLateMax Source code
sverchkov/bionetwork documentation built on May 26, 2017, 11:03 p.m.