sw1/theseus: Analysis and Visualization Tools for Microbial Community Data

An approach to the visualization, analysis, and interpretation of (microbial) community composition data, especially those originating from amplicon sequencing. Analysis techniques include constrained and unconstrained ordination and visualizing taxonomic abundances and spatial patterns, among others. Methods intended to assist bioinformaticians and ecologists in selecting read trimming by quality scores and preprocessing/denoising of datasets are also provided.

Getting started

Package details

LicenseMIT + file LICENSE
URL http://github.com/EESI/theseus
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
sw1/theseus documentation built on Dec. 21, 2017, 7:34 p.m.