hf.readData: Simple interface to read an aligned fasta file into PopGenome
In swainechen/hfufs: Fu's Fs and Strobeck's S Calculators for Arbitrary Parameters

Description Usage Details Examples

View source: R/hf.readData.R

Reads a given fasta file into a PopGenome GENOME object. We assume that the fasta file is aligned. This will not do anything related to associated gff files. This uses the defaults of the PopGenome::readData function: populations = FALSE format = "fasta" For other information, see the PopGenome documentation. If you need something more complex than a simple fasta file loaded, it is recommended to use the PopGenome functions directly.

1	hf.readData(fasta_file)

Note this will load the PopGenome package if needed.

## Not run: 
fasta_file <- "name_of_aligned.fasta"
pg.object <- hf.readData(fasta_file)
pg.dataframe <- hf.alignment.stats(pg.object)

## End(Not run)