addDimRed: addDimRed

In swaruplabUCI/ArchRtoSignac: What the Package Does (One Line, Title Case)

addDimRed

Description

This function adds dimension reduction ('Harmony' and/or 'IterativeLSI') and UMAP to a SeuratObject

Usage

addDimRed(
  ArchRProject,
  SeuratObject,
  addUMAPs = "UMAP",
  reducedDims = "IterativeLSI"
)

Arguments

ArchRProject	An ArchRProject
SeuratObject	A Seurat object
addUMAPs	add UMAPs by default
reducedDims	'Harmony' or 'IterativeLSI' or 'IterativeLSI2', the dimension reduction to be transfered from ArchRProject to Signac SeuratObject (default is 'IterativeLSI')

Examples

seurat_atac <- addDimRed(ArchRProject = proj, SeuratObject = seurat_atac, reducedDims = 'IterativeLSI') #reducedDims == c('IterativeLSI', 'Harmony')

swaruplabUCI/ArchRtoSignac documentation built on Aug. 23, 2024, 2:03 p.m.