ggplot_builder: ggplot_builder function

In swebb1/quest: Quest: Data exploration

Description

This function builds a ggplot2 function to plot data

Usage

ggplot_builder(d, x = NA, y = NA, geom = "point", facet = NA,
  facet_drop = T, facet_col = T, facet_row = T, smooth = NA,
  smooth.se = T, xlim = NA, ylim = NA, xrotate = 0, colour = NA,
  fill = NA, alpha = NA, text = NA, labels = NA,
  label_display = NA, nudge_y = 0, nudge_x = 0,
  bar.position = "stack", binwidth = 0, bins = 0, outliers = T,
  varwidth = F, enable.plotly = F, theme = "grey", logx = F,
  logy = F, man_colour = NA, man_fill = NA, man_alpha = NA,
  tile_height = NA, tile_width = NA, gradient = "default",
  gradient.trans = "identity", gradient.steps = 10,
  gradient.range = NA, colourset = "default", coord_flip = F,
  cut_method = "number", cut.n = 10, factorlim = 50,
  stat.method = "count", stat.func = "mean")

Arguments

d	Table of data
x, y, z	Variables for each dimension
geom	Select a ggplot2 geometry (currently point,line,histogram,bar,boxplot,violin)
facet	Facet plot by values in a column
facet_drop	Drop faceted panels without values (T)
facet_col	Number of columns (0)
facet_row	Number of rows (0)
smooth	Add a smooth line to point plots (gam,lm,loess,rlm,glm,auto)
xlim	Range displayed on x-axis
ylim	Range displayed on y-axis
xrotate	Angle to rotate x-axis labels (90=vertical)
colour	A variable to colour by
fill	A variable to fill by
alpha	A variable to alpha by
text	Variable to show in plotly when hover over points
labels	Variable to label points by
label_display	vector of labels to display
nudge_y	shift label on y-axis
nudge_x	shift label on x-axis
bar.position	Position of bars in a bar plot (stack,dodge,fill)
binwidth	Size of binwidth in binned plots (histogram)
bins	Add a stat_bin with this number of bins
outliers	Set outliers=F to remove outliers from boxplot
varwidth	Set varwidth=T to plot boxplots with variable width based on dataset size
enable.plotly	convert to interactive Plotly plot
theme	Set ggplot theme (grey,bw,dark,light,void,linedraw,minimal,classsic)
logx, logy	Log the variable first. Defaults to F.
man_colour	Select a solid colour
man_fill	Select a solid fill colour
man_alpha	Select a static alpha value
tile_height	Set height of tile for geom_tile
tile_width	Set width of tile for geom_tile
gradient	Select gradient colour scheme (default,Matlab)
gradient.trans	Transform gradient scale (identity,log,log10,log2,sqrt)
gradient.steps	Set number of shades in gradient
gradient.range	Set range of values covered by gradient
colourset	Select colour scheme (default,Set1,Set2,Set3,Spectral)
coord_flip	Flip the x and y axes (default=F)
cut_method	Select method for binning continuous X axis in boxplots (number,interval,width see cut_interval etc.)
cut.n	Binning number applied to cut_method
factorlim	Set maximum levels allowed to use factors for plotting (default=50)
stat.method	Set stat method for barplots (count,identity,summary) (default=bin)
stat.func	Set summary function for stat.method="summary" (default=mean)

Examples

ggplot_builder()

swebb1/quest documentation built on Dec. 18, 2019, 10:33 a.m.