repCon: repCon

In syanco/checkyourself: Simulates a simple agent-based species distribution model

Description

repCon

Usage

repCon(reps, radius, ID.mat, hab.mat, n.individ, A.coef, ...)

Arguments

reps	Number of model runs to simulate (each run conisting of 'n.individ' number of individuals settling)
radius	Sets how many cells away from the occupied cells should be included in the "neighborhood". Passed to 'neighbors'. Passed to 'settle.con'.
ID.mat	A matrix of the same size as the simulated landscape but with the value of each cell corresponding to it's cell ID. Passed to 'settle.con'.
hab.mat	The matrix containing the "grown" habitats enumerated by the strength of preference (e.g., the output from pref.strength, not convert.cell.) Note that which hab.mat to use (i.e., which preference strength to use) is arbitrary for the CA model, but the choice must match the 'A.coef' supplied (below) andmust be entered into this function as only the single matrix and not the vector of matirces used to iterate through the HP model.
n.individ	The number of individuals included in the ABM.
A.coef	The habitat preference parameter that matches the hab.mat supplied. This is the "key" that allows the function to interpret each cell of the matrix as either "Habitat A" or "Habitat B".
...	Additional arguments as necessary.

Value

Returns a list, each entry of which is the output of 'reps' number of iterations of 'settle.hab' (if vecotrized, for a a single parameterization).

syanco/checkyourself documentation built on Jan. 18, 2021, 4:50 a.m.