TreeAndLeaf-package: TreeAndLeaf: A graph layout for binary trees with focus on...
In sysbiolab/TreeAndLeaf: Displaying binary trees with focus on dendrogram leaves
Description
Details
Index
Author(s)
References
Description
The TreeAndLeaf package combines unrooted and force-directed graph algorithms
in order to layout binary trees, aiming to represent multiple layers of
information onto dendrogram leaves.
Details
Package: TreeAndLeaf
Type: Package
Depends: R (>= 4.0)
Imports: RedeR, igraph, ape
Suggests: knitr, rmarkdown, BiocStyle, RUnit, BiocGenerics, stringr,
RColorBrewer
License: Artistic-2.0
biocViews: NetworkEnrichment, GraphAndNetwork
Index
formatTree: A theme function for tree-and-leaf igraph objects.
treeAndLeaf: Layout a TreeAndLeaf diagram.
Further information is available from the vignettes
vignette("TreeAndLeaf").
Author(s)
Leonardo W. Kume, Luis E. A. Rizzardi, Milena A. Cardoso, Mauro A. A. Castro
References
CASTRO, M. A. et al. RedeR: R/Bioconductor package for representing modular
structures, nested networks and multiple levels of hierarchical associations.
Genome Biology, 13(4):R29, 2012.
CASTRO, M. A. A. et al. Regulators of genetic risk of breast cancer identified
by integrative network analysis. Nature Genetics, 48(1):12–21, 2016.
RUSU, A.; SANTIAGO, C. Grid Drawings of Binary Trees: An Experimental
Study. Journal of Graph Algorithms and Applications,
12(2):131–195, 2008.
sysbiolab/TreeAndLeaf documentation built on Oct. 23, 2021, 12:12 a.m.
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Description Details Index Author(s) References
Description
The TreeAndLeaf package combines unrooted and force-directed graph algorithms in order to layout binary trees, aiming to represent multiple layers of information onto dendrogram leaves.
Details
| Package: | TreeAndLeaf |
| Type: | Package |
| Depends: | R (>= 4.0) |
| Imports: | RedeR, igraph, ape |
| Suggests: | knitr, rmarkdown, BiocStyle, RUnit, BiocGenerics, stringr, RColorBrewer |
| License: | Artistic-2.0 |
| biocViews: | NetworkEnrichment, GraphAndNetwork |
Index
| formatTree: | A theme function for tree-and-leaf igraph objects. |
| treeAndLeaf: | Layout a TreeAndLeaf diagram. |
Further information is available from the vignettes
vignette("TreeAndLeaf").
Author(s)
Leonardo W. Kume, Luis E. A. Rizzardi, Milena A. Cardoso, Mauro A. A. Castro
References
CASTRO, M. A. et al. RedeR: R/Bioconductor package for representing modular structures, nested networks and multiple levels of hierarchical associations. Genome Biology, 13(4):R29, 2012.
CASTRO, M. A. A. et al. Regulators of genetic risk of breast cancer identified by integrative network analysis. Nature Genetics, 48(1):12–21, 2016.
RUSU, A.; SANTIAGO, C. Grid Drawings of Binary Trees: An Experimental Study. Journal of Graph Algorithms and Applications, 12(2):131–195, 2008.
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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