Files in syyang93/analyzeR

This package contains functions that Stephanie uses for her analysis of recount RNAseq data.

R/examine_symbol.R R/examine_symbol.mesa.R R/examine_transcript.R R/filtering_steps.R R/find_outliers.R R/get.vars.R R/get_transcripts.R R/identify_pca_outliers.R R/inv.norm.transform.R R/lm_test.R R/look_pca.R R/make.forestplot.R R/make.subjids.R R/perform.t.tests.R R/perm.for.cutoff.R R/perm.for.cutoff.transcripts.R R/perm.for.cutoff2.R R/pval_qqplot.R R/remove_incomplete_covariates.R R/remove_mito_outlier.R R/run.all.lms.R R/run_lm.R R/run_lm_default.R R/testing_assoc.R R/testing_assoc.transcript.R README.md man/examine_symbol.Rd man/examine_symbol.mesa.Rd man/examine_transcript.Rd man/filtering_steps.Rd man/find_outliers.Rd man/get.vars.Rd man/get_transcripts.Rd man/identify_pca_outliers.Rd man/inv.norm.transform.Rd man/lm_test.Rd man/look_pca.Rd man/make.forestplot.Rd man/make.subjids.Rd man/perform.t.tests.Rd man/perm.for.cutoff.Rd man/perm.for.cutoff.transcripts.Rd man/perm.for.cutoff2.Rd man/pval_qqplot.Rd man/remove_incomplete_covariates.Rd man/remove_mito_outlier.Rd man/run.all.lms.Rd man/run_lm.Rd man/run_lm_default.Rd man/testing_assoc.Rd man/testing_assoc.transcript.Rd