| add_key | Adds key information to qPCR data |
| addPOadjust | Adjusts for pipetting order |
| assignPO | Assigns pipetting order based on well position |
| count_nas | Counts the number of NAs in a vector |
| ddpcr_process | Shapes the ddPCR data into a better format for ggplot |
| density_rug | Function that makes a ggplot density plot with a rug on the... |
| filterRPPH | Filters out samples that have CT.RPPH1 > 5SD away from mean |
| filterSD | Filters out samples that have deltaCTs with a standard... |
| find.outliers | Function that will find outliers in a vector (default: > 3 SD... |
| formatbeta | Function that formats betas to look nice |
| formatpval | Function that formats betas to look nice |
| getAllDups | Shapes the ddPCR data into a better format for ggplot |
| getDeltaCT | Reads qPCR data into a dataframe |
| getFinalMeans | Gets the final means after adjusting for pipetting order |
| getMeanSD | Gets the mean and standard deviation of deltaCT for each... |
| getRanks | Performs rank-order analysis on qPCR triplicates.... |
| give.n | Allows boxplots to output the number of observations for each... |
| look | Function that gives you the first five columns and first five... |
| looknd | Function that will look at the ND1 copies in ddPCR data |
| look.resid | Looks at the residuals vs. predicted values for a model |
| lookrpph | Function that will look at the RPPH1 copies in ddPCR data |
| make.forestplot | Function for pretty forestplots, adapted from Ryan |
| make.quartiles | Function to make quartiles from a column within a dataframe... |
| make.quintiles | Function to make quintiles from a column within a dataframe... |
| mydiag.panel | Function for making fancy correlation matrices, adapted from... |
| omit.outliers | Function that will find outliers in a vector (default: > 3 SD... |
| panel.cor | Function for plotting cor values onto a correlation matrix |
| plot_lm | Plots xvar against yvar, and title is the P-value |
| read_qpcr_data | Reads qPCR data into a dataframe |
| sampleGroup | Function for sampling, taken from stackoverflow |
| substrRight | Takes the last n characters of a string. Taken from:... |
| twolines | Function for making fancy correlation matrices, adapted from... |
