R package with Stephanie's functions

add_key | Adds key information to qPCR data |

addPOadjust | Adjusts for pipetting order |

assignPO | Assigns pipetting order based on well position |

count_nas | Counts the number of NAs in a vector |

ddpcr_process | Shapes the ddPCR data into a better format for ggplot |

density_rug | Function that makes a ggplot density plot with a rug on the... |

filterRPPH | Filters out samples that have CT.RPPH1 > 5SD away from mean |

filterSD | Filters out samples that have deltaCTs with a standard... |

find.outliers | Function that will find outliers in a vector (default: > 3 SD... |

getAllDups | Shapes the ddPCR data into a better format for ggplot |

getDeltaCT | Reads qPCR data into a dataframe |

getFinalMeans | Gets the final means after adjusting for pipetting order |

getMeanSD | Gets the mean and standard deviation of deltaCT for each... |

getRanks | Performs rank-order analysis on qPCR triplicates.... |

give.n | Allows boxplots to output the number of observations for each... |

look | Function that gives you the first five columns and first five... |

looknd | Function that will look at the ND1 copies in ddPCR data |

look.resid | Looks at the residuals vs. predicted values for a model |

lookrpph | Function that will look at the RPPH1 copies in ddPCR data |

make.forestplot | Function for pretty forestplots, adapted from Ryan |

make.quartiles | Function to make quartiles from a column within a dataframe... |

make.quintiles | Function to make quintiles from a column within a dataframe... |

mydiag.panel | Function for making fancy correlation matrices, adapted from... |

omit.outliers | Function that will find outliers in a vector (default: > 3 SD... |

panel.cor | Function for plotting cor values onto a correlation matrix |

read_qpcr_data | Reads qPCR data into a dataframe |

sampleGroup | Function for sampling, taken from stackoverflow |

substrRight | Takes the last n characters of a string. Taken from:... |

twolines | Function for making fancy correlation matrices, adapted from... |

Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.