calc.ai_new: Determnine Allelic imbalance
In sztup/scarHRD: Estimating Genomic scars signatures (LST, TAI,LOH)
Description
Usage
Arguments
Value
Description
Determnine Allelic imbalance
Usage
1
2
calc.ai_new(seg, chrominfo, min.size = 1e+06, cont = 0,
ploidyByChromosome = TRUE, shrink = TRUE)
Arguments
seg
segmentation data
chrominfo
reference genome version
min.size
min.size
ploidyByChromosome
option to determine ploidy per chromosome
shrink
shrink
Value
number of Allelic Imbalances
sztup/scarHRD documentation built on Aug. 26, 2020, 4:19 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
Determnine Allelic imbalance
Usage
1 2 | calc.ai_new(seg, chrominfo, min.size = 1e+06, cont = 0,
ploidyByChromosome = TRUE, shrink = TRUE)
|
Arguments
seg |
segmentation data |
chrominfo |
reference genome version |
min.size |
min.size |
ploidyByChromosome |
option to determine ploidy per chromosome |
shrink |
shrink |
Value
number of Allelic Imbalances
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.