extract_meta_data: Extract meta data

In szymczak-lab/harmonizeGeneExprData: Harmonization of gene expression data from GEO and ArrayExpress

Extract meta data

Description

Extract meta data from GEO or ArrayExpress depending on study identifier.

Usage

extract_meta_data(study.id, temp.dir = tempdir(), platform = NULL)

Arguments

study.id	[character(1)] study identifier (GSEXXX for GEO, E-MTAB-XXX for ArrayExpress)
temp.dir	[character(1)] directory where temporary files should be stored
platform	[character(1)] platform to be selected in GEO studies which use several platforms

Details

Different meta data information is available at GEO and ArrayExpress.

Value

[list] meta data (content depending on information available at GEO or ArrayExpress)

Examples

meta.data.l = extract_meta_data(study.id = "GSE67785")

szymczak-lab/harmonizeGeneExprData documentation built on Dec. 1, 2022, 9:07 p.m.