DendSer.dendrogram: Tries to run DendSer on a dendrogram

In talgalili/dendextend: Extending 'dendrogram' Functionality in R

Tries to run DendSer on a dendrogram

Description

Implements dendrogram seriation. The function tries to turn the dend into hclust, on which it runs DendSer.

Also, if a distance matrix is missing, it will try to use the cophenetic distance.

Usage

DendSer.dendrogram(dend, ser_weight, ...)

Arguments

dend	An object of class dendrogram
ser_weight	Used by cost function to evaluate ordering. For cost=costLS, this is a vector of object weights. Otherwise is a dist or symmetric matrix. passed to DendSer. If it is missing, the cophenetic distance is used instead.
...	parameters passed to DendSer

Value

Numeric vector giving an optimal dendrogram order

See Also

DendSer, DendSer.dendrogram , untangle_DendSer, rotate_DendSer

Examples

## Not run: 
library(DendSer) # already used from within the function
hc <- hclust(dist(USArrests[1:4, ]), "ave")
dend <- as.dendrogram(hc)
DendSer.dendrogram(dend)

## End(Not run)

talgalili/dendextend documentation built on Jan. 27, 2024, 7:43 p.m.