NEWS.md

In talgalili/dendextendRcpp: Faster Dendrogram Manipulation using 'Rcpp'

dendextendRcpp 0.6.0 (2015-05-22)

UPDATED R FUNCTIONS: * renamed: labels.dendrogram -> dendextendRcpp_labels.dendrogram * assign_dendextendRcpp_to_dendextend - * now loads into dendextend_options the dendextendRcpp_labels.dendrogram. This is intended to fix: "checking use of S3 registration ... WARNING Registered S3 method from a standard package overwritten by 'dendextendRcpp': method from labels.dendrogram stats" * Added "dendextend::" to fix: "no visible global function definition for 'dendextend_options'" * Fix various "no visible global function definition for"

OTHER NOTES: * Now works through "create_dendextend_options" (Thanks to suggestions by Kurt Hornik and Uwe Ligges).

dendextendRcpp 0.5.1 (2014-03-16)

UPDATED R DOCS: * Hiding {microbenchmark} from the docs (Props to Prof Brian Ripley), from the functions: dendextendRcpp_get_branches_heights, dendextendRcpp_heights_per_k.dendrogram, dendextendRcpp::labels.dendrogram

dendextendRcpp 0.5.0 (2014-03-15)

UPDATED DESCRIPTION: * Added dependency for R (>= 3.0.0)

UPDATED R FUNCTIONS: * renamed: * cut_lower_fun -> dendextendRcpp_cut_lower_fun * get_branches_heights -> dendextendRcpp_get_branches_heights * heights_per_k.dendrogram -> dendextendRcpp_heights_per_k.dendrogram

OTHER NOTES: * Now works through "create_dendextend_options" (Thanks to suggestions by Kurt Hornik and Uwe Ligges). * dendextendRcpp 0.5.0 is intended to be shipped to CRAN.

dendextendRcpp 0.4.0 (2014-03-01)

UPDATED R FUNCTIONS: * assign_dendextendRcpp_to_dendextend - Moved to passing the functions through "options" instead of through assignInNamespace.

OTHER NOTES: * Version 0.4.0 of dendextendRcpp will not be effective for versions of dendextend which are before 0.13.0 (however, it would also not conflict with them...) * dendextendRcpp 0.4.0 is intended to be shipped to CRAN.

dendextendRcpp 0.3.3 (2014-02-04)

UPDATED R FUNCTIONS: * assign_dendextendRcpp_to_dendextend - remove assign of old_ functions (we might as well just copy them manually) * old_* functions moved to the new imports_dendextend.r file

UPDATED Rcpp FUNCTIONS: * patches for Rcpp 0.11.0, using as to wrap some functions so that the package will compile. Props to Kevin Ushey! * changed .hpp -> .h (for portability issues, props to Kurt Hornik)

UPDATED DESCRIPTION: * added Kevin Ushey to Authors@R list (thanks to his patch)

OTHER NOTES: * dendextend 0.3.3 is intended to be shipped to CRAN. (first release!)

dendextendRcpp 0.3.2 (2014-02-03)

UPDATED R FUNCTIONS: * assign_dendextendRcpp_to_dendextend - remove require(dendextend) * stats:::labels.dendrogram -> stats_labels.dendrogram (in the new imports_stats.r file)

TESTS: * dendextend::: -> old_

DOCS: * Added aliases to: 'old_cut_lower_fun', 'old_get_branches_heights', 'old_heights_per_k.dendrogram'. Thus fixing "checking for missing documentation entries ... WARNING - Undocumented code objects:" * Fix: Codoc mismatches from documentation object 'labels.dendrogram' * cut_lower_fun - fix "cutree" links (to go to exact package) * Fix: Undocumented arguments in documentation object 'cut_lower_fun' * Rcpp_cut_lower -> dendextendRcpp::Rcpp_cut_lower * Undocumented code objects - added aliases

OTHER NOTES: * some minor updated to README.md * Fixed: cut_lower_labels -> cut_lower_fun * Added importFrom in order to fix "Packages in Depends field not imported from:"

• dendextend 0.3.2 is intended to be shipped to CRAN. (first release! - failed after not working with Rcpp 0.11.0, though it did work for Rcpp 0.10.6)

dendextendRcpp 0.3.1 (2014-02-02)

UPDATED R FUNCTIONS: * assign_dendextendRcpp_to_dendextend * added old_cut_lower_fun * Fixed the assignment of "old_" to "make sense"... (they are now added to dendextendRcpp enviornment)

OTHER NOTES: * Fixed Authors@R in DESCRIPTION * Fixes to indentation and some Rcpp modified code

dendextendRcpp 0.3.0 (2013-08-20)

NEW R FUNCTIONS ADDED: * cut_lower_fun - overrides dendextend function - will give a 4-16 times faster cutree(h) function for R!

NEW RCPP FUNCTIONS ADDED: * Rcpp_cut_lower (+find_dend_for_height). This function changes the output of the nodes to be of dendrogram class which enables the fast operation of functions on them!

dendextendRcpp 0.2.1 (2013-08-20)

OTHER NOTES: * added zzz.r file - with code to override dendextend functions in case dendextendRcpp is loaded AFTER dendextend. * fixed Rcpp_labels_dendrogram works test - adjusting for the new "warn" parameter.

dendextendRcpp 0.2.0 (2013-08-19)

NEW R FUNCTIONS ADDED: * get_branches_heights - overrides dendextend function dendextend:::get_branches_heights function. * heights_per_k.dendrogram - gives a 10 to 130(!) faster loading times.

NEW RCPP FUNCTIONS ADDED: * get_height * push_back_heights * Rcpp_get_dend_heights * Rcpp_k_per_height * Rcpp_k_per_heights (plural)

OTHER NOTES: * Moved "is" function to a new file called "is_functions.cpp". Created a "is_functions.hpp" file for it, and made sure to call it from "labels_dendrogram.cpp" * moved labels.dendrogram to a new file labels_dendrogram.r

BUG FIXES * labels.dendrogram - now returns a label also if the tree is just a leaf.

THE PACKAGE IS NOW RENAMED: * from RcppDend to dendextendRcpp - in order to have it easier to remember (at least for me).

UPDATED FUNCTIONS: * labels.dendrogram - added warn=FALSE

dendextendRcpp 0.1.1 (2013-08-17)

BUG FIXES * Added missing rows from NAMESPACE (They were removed automatically due to a bug in roxygen2+Rstudio)

OTHER NOTES: * Added tests

dendextendRcpp 0.1.0 (2013-08-16)

NEW R FUNCTIONS ADDED: * labels.dendrogram - overrides R's default stats:::labels.dendrogram function.

NEW RCPP FUNCTIONS ADDED: * is_list * is_string * is_logical * is_leaf * get_label * push_back_labels * Rcpp_labels_dendrogram * Rcpp_count_leaves

OTHER NOTES: * First commit. Includes DESCRIPTION, a template for a basic test, a labels function, and this NEWS.

TODO

• Check if we have any old_ that should be changed into dendextend_

talgalili/dendextendRcpp documentation built on May 31, 2019, 2:53 a.m.