ExampleData: Example scRNASeq Data

In tallulandrews/CycleMix: Cell-Cycle using Mixture Models

Example scRNASeq Data

Description

Filtered gene expression matrix of cell-cycle staged mESCs from Buettner et al. (2015). Cells were filtered to remove those with fewer than 6000 detected genes. Genes where filtered to contain only the significant features (5% FDR) using M3Drop and all the cell-cycle-related genes.

Known cell-cycle stage labels are contained in the "cell_type1" column of the colData. Gene symbols are contained in the "feature_symbols" column of the rowData.

Contains both counts and log2-CPM ("logcounts") matrices.

Usage

Ex

Format

A SingleCellExperiment object containing 2002 genes and 273 cells

Value

A SingleCellExperiment object

References

Buettner et al. (2015). Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequening data reveals hidden subpopulation of cells. Nature Biotechnology. 33:155-160.

tallulandrews/CycleMix documentation built on Sept. 28, 2022, 6:55 p.m.