Man pages for taoshengxu/CancerSubtypes
Cancer subtypes identification, validation and visualization based on multiple genomic data sets
| affinityMatrix | This is the affinity Matrix function extracted from SNFtool... |
| data.checkDistribution | Data check distribution |
| data.imputation | Data imputation |
| data.normalization | Data normalization |
| DiffExp.limma | DiffExp.limma |
| dist2 | This is the distance function extracted from SNFtool package.... |
| drawHeatmap | Generate heatmaps |
| ExecuteCC | Execute Consensus Clustering |
| ExecuteCNMF | Execute Consensus NMF (Nonnegative matrix factorization) |
| ExecuteiCluster | Execute iCluster (Integrative clustering of multiple genomic... |
| ExecuteSNF | Execute SNF(Similarity Network Fusion ) |
| ExecuteSNF.CC | Execute the combined SNF (Similarity Network Fusion) and... |
| ExecuteWSNF | Execute the WSNF(Weighted Similarity Network Fusion) |
| FSbyCox | Biological feature (such as gene) selection based on Cox... |
| FSbyMAD | Biological feature (such as gene) selection based on the most... |
| FSbyPCA | Biological feature (such as gene) dimension reduction and... |
| FSbyVar | Biological feature (such as gene) selection based on the most... |
| GeneExp | Dataset: Gene expression |
| miRNAExp | Dataset: miRNA expression |
| Ranking | Dataset: A default ranking of features for the fuction... |
| saveFigure | This function save the figure in the current plot. |
| sigclustTest | A statistical method for testing the significance of... |
| silhouette_SimilarityMatrix | Compute or Extract Silhouette Information from Clustering... |
| spectralAlg | This is an internal function but need to be exported for the... |
| status | Dataset: Survival status |
| survAnalysis | Survival analysis(Survival curves, Log-rank test) and compute... |
| time | Dataset: Survival time |
