vegan_otu: transform a otu table object from phyloseq object to matrix
In taowenmicro/easyMicrobiome:
Description
Usage
Arguments
Value
Author(s)
References
Examples
Description
transform a otu table object from phyloseq object to matrix
Usage
1
vegan_otu(physeq)
Arguments
physeq
a phyloseq object from R package phyloseq
Value
matrix
Author(s)
Contact: Tao Wen 2018203048@njau.edu.cn Jun Yuan junyuan@njau.edu.cn
References
Yuan J, Zhao J, Wen T, Zhao M, Li R, Goossens P, Huang Q, Bai Y, Vivanco JM, Kowalchuk GA, Berendsen RL, Shen Q
Root exudates drive the soil-borne legacy of aboveground pathogen infection
Microbiome 2018,DOI: doi: 10.1186/s40168-018-0537-x
Examples
1
otu = otu_table(ps)
taowenmicro/easyMicrobiome documentation built on Nov. 10, 2020, 10:18 p.m.
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Description Usage Arguments Value Author(s) References Examples
Description
transform a otu table object from phyloseq object to matrix
Usage
1 | vegan_otu(physeq)
|
Arguments
physeq |
a phyloseq object from R package phyloseq |
Value
matrix
Author(s)
Contact: Tao Wen 2018203048@njau.edu.cn Jun Yuan junyuan@njau.edu.cn
References
Yuan J, Zhao J, Wen T, Zhao M, Li R, Goossens P, Huang Q, Bai Y, Vivanco JM, Kowalchuk GA, Berendsen RL, Shen Q Root exudates drive the soil-borne legacy of aboveground pathogen infection Microbiome 2018,DOI: doi: 10.1186/s40168-018-0537-x
Examples
1 | otu = otu_table(ps)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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