IBSData: IBS data

In tapj/IBSMicrobiota: Tap, Derrien et al article R source code.

Description

This dataset contains all metadata and microbial data from the IBS Simren study

Usage

IBSData

Format

A list of 3 data frames

Variables

• metadata: Clinical metadata, sample type and gas exhaled

  • Patient_ID

  • Visit

  • Sample_type

  • study_group

  • Methanogens_qPCR

  • Sample_ID

  • Health

  • Gender

  • Age

  • Height

  • Weight

  • BMI

  • H2

  • CH4

  • H2_group

  • CH4_group

  • IBS.Severity.Score

  • SSgroup

  • Probiotics

  • Lactulose_clusters

• otu: Microbial OTU table

• tax: OTU Greengenes taxonomy

Examples

head(IBSData$metadata)

tapj/IBSMicrobiota documentation built on May 31, 2019, 3:48 a.m.