getLayers: Get the necessary layers for predictive modules such as...
In tati-micheletti/usefulFuns: Useful functions for my modules and packages

Description Usage Arguments Value Author(s)

Get the necessary layers for predictive modules such as caribouPopGrowth and caribouRSF.

getLayers(
  currentTime,
  cohortData,
  pixelGroupMap,
  startTime,
  endTime,
  recoveryTime = 40,
  listSACaribou,
  anthropogenicLayer,
  roadDensity,
  waterRaster,
  isRSF = FALSE,
  decidousSp = NULL,
  oldBurnTime = NULL,
  elevation = NULL,
  vrug = NULL,
  LCC05 = NULL,
  reclassLCC05 = NULL,
  rasterToMatch = NULL,
  destinationPath
)

`currentTime`	numeric. Current time being used (i.e. `time(sim)`).
`cohortData`	data.table. Output from LandR_Biomass module.
`pixelGroupMap`	raster to identify the cohortData.
`startTime`	numeric. startTime of the simulation. Needed to verify and potentially adjust relative simulation times.
`endTime`	numeric. endTime of the simulation. Needed to verify and potentially adjust relative simulation times.
`recoveryTime`	numeric. Recovery time in years that the forest needs to support Caribou. Default = 40.
`listSACaribou`	list of shapefiles with polygons for which we want to calculate lambda for the caribou demographic model.
`anthropogenicLayer`	Anthropogenic disturbance (raster) layer. Currently, 500m buffered anthropogenic disturbance for demographic models.
`roadDensity`	Anthropogenic disturbance (raster) layer. Currently, road density layer used for RSF models.
`waterRaster`	Raster layer indicating water bodies.
`isRSF`	logical. Identify if it should get the layers for the RSF or demographic model.
`decidousSp`	binary raster layer indicating if the dominant biomass in a pixel belongs to a deciduous species.
`oldBurnTime`	numeric. Definition of the initial interval considered to be old burn. The end of this time is 20 years later (i.e. 40-60 years).
`elevation`	RasterLayer of elevation
`vrug`	RasterLayer of ruggeness
`LCC05`	RasterLayer of landcover classes 2005
`reclassLCC05`	List with reclassification for LCC05 values (i.e. LCC05 classes that should be classified as shrub or herbs)
`rasterToMatch`	RasterLayer template for these layers to match.
`destinationPath`	TODO