kover2009: kover2009 MAGIC genotypes

Description Usage Format Details

Description

A cross2 object containing genotype data for the Arabidopsis MAGIC lines as described in Kover et al. (2009).

Usage

1

Format

A cross2 object with genotype information for all 703 MAGIC lines.

Details

The data used to create this object were downloaded from Richard Mott's server, currently hosted at: http://mtweb.cs.ucl.ac.uk/mus/www/magic/.

According to the website's description:

"Note that the original 2009 paper used only 527 MAGIC lines and was based on the TAIR8 genome. The data and resources for MAGIC now available on this page have been expanded to 703 genotyped lines and the SNPs remapped to TAIR9/TAIR10."

This fact might explain some discrepancies in the SNP coordinates between the data processed here and the data processed by Karl Broman, who used the supplementary file from Gnan et al. (2014).


tavareshugo/atMAGIC documentation built on April 25, 2021, 7:55 a.m.