qtl2_tidiers: Tidy R/qtl2 objects

In tavareshugo/qtl2helper: Helper functions for R/qtl2 package

Tidy R/qtl2 objects

Description

Convert the output of qtl2 functions to a tibble in long format. These are generally useful for downstream plotting analysis.

Usage

## S3 method for class 'scan1'
tidy(x, map = NULL)

## S3 method for class 'scan1coef'
tidy(x, map = NULL)

## S3 method for class 'calc_genoprob'
tidy(x, map = NULL)

## S3 method for class 'scan1perm'
tidy(x, alpha = 0.05)

Arguments

x	The object to coerce.
map	An optional list of vectors of marker positions, as produced by qtl2::insert_pseudomarkers() or the ⁠$gmap⁠ element of a cross2 object.
alpha	Vector of significance levels (for scan1perm objects).

Details

At the moment the output from the following R/qtl2 functions are recognised:

• scan1()

• scan1coef()

tavareshugo/qtl2helper documentation built on April 24, 2023, 11:19 a.m.