write_xgmml: Write a network saving it in an 'XGMML' file.

In tavazzie/bnstructScore: Bayesian Network Structure Learning from Data with Missing Values

Description

Write a network on disk, saving it in an XGMML file, for importing it in Cytoscape.

Usage

write_xgmml(
  x,
  path = "./network",
  write.wpdag = FALSE,
  node.col = rep("white", num.nodes(x)),
  frac = 0.2,
  max.weight = max(wpdag(x))
)

## S4 method for signature 'BN'
write_xgmml(
  x,
  path = "./network",
  write.wpdag = FALSE,
  node.col = rep("white", num.nodes(x)),
  frac = 0.2,
  max.weight = max(wpdag(x))
)

Arguments

x	the BN object.
path	file name with relative or absolute path to be written.
write.wpdag	write the weighted PDAG computed using bootstrap samples or the MMPC structure algorithm, instead of the normaldag (default FALSE).
node.col	vector of colors for each node of the network (in R colornames).
frac	minimum fraction [0,1] of presence of an edge to be plotted (used in case of write.wpdag=TRUE).
max.weight	maximum possible weight of an edge (used in case of write.wpdag=TRUE).

tavazzie/bnstructScore documentation built on Dec. 23, 2021, 7:47 a.m.