Description Usage Arguments Value
View source: R/parameter_grid.R
Given a dataframe of differential gene expression results, this function will implement the specified pipeline with each combination of parameters and return a dataframe of performance evaluation metrics.
1 2 3 4 5 6 7 8 9 | parameter_grid(
deg,
target,
grid,
pipeline_method = NULL,
connected_filter = NULL,
n_cores = 1,
...
)
|
deg |
Object of class ' |
target |
A string. The gene symbol associated with the causal gene. |
grid |
Object of class ' |
n_cores |
Numeric. Number of cores to run on. Default value is 1. |
pipeline |
String. The workflow pipeline to be used. The value can be either
'centrality' or 'propagation', corresponding the |
method |
A string specifying the network analysis method for the pipeline.
See ? |
Object of class 'dataframe
', with columns corresponding to the
parameter combination implemented and the
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